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Report for CCDS48452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48452.1 Public Mus musculus 1 Mndal 23 108 98 CCDS HistoryNCBI Gene:100040462Re-query CCDS DB by CCDS ID:48452.1Re-query CCDS DB by GeneID:100040462See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48452.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000188804.6 ENSMUSP00000140610.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188804.6Link to Ensembl Protein Viewer:ENSMUSP00000140610.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188804Re-query CCDS DB by Protein ID:ENSMUSP00000140610
Original member Current member NCBI NM_001170853.1 NP_001164324.1 Accepted alive Link to Nucleotide Sequence:NM_001170853.1Link to Protein Sequence:NP_001164324.1Re-query CCDS DB by Nucleotide ID:NM_001170853Re-query CCDS DB by Protein ID:NP_001164324Link to BLAST:NP_001164324.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164324.1 538 D0QMC3 538 100% 0 0

Chromosomal Locations for CCDS 48452.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 173857385 173857510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173860176 173860364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173862461 173862883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173865399 173865557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173871378 173871545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173872852 173873019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173874351 173874472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173875576 173875837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1617 nt):
ATGGCTGAATACAAGAAAATTGTTCTTCTAAAAGGATTAGAAAGCATGGAGGACTATCAGTTTAGGACAG
TCAAGTCCTTACTAAGAAAAGAACTAAAACTTACTAAAAAATTGCAAGAAGATTATGATAGGATTCAGCT
GGCGGACTGGATGGAGGACAAGTTCCCCAAATATGCTGGACTAGACAAACTGATAAAAGTGTGTGAGCAC
ATAAAAGATCTTAAAGACCTTGCTAAAAAACTTAAAACCGAGAAGGCAAAAGTTCAAAAGAAAAAGCAAG
GAAAATGCAAAACGGCTGTGAAAAAAAAAGGTCAAGATGAACTCAGTTCCTCCGAATCTCTTTTCATCAA
TAAAGAATCATACAAGAGTGTACCGTCTTCAAAGAAAAAGGGAAAAGCGATCGCAAAAACTGAAGGTGAA
AAAAAAAATAAGCTCACCCAGGATCAGGATCATCTTCCAGAAACTTCAGGAACCGATATAAAAACAGAGG
AAGATTGTCTCCAGAATTCTCCTAAGCCTCCACCAACATCACCCAGCAGTTCCTCAAACAAGAAAAAGAG
AAAAGAGATCACAAAAACTGAAGGTGGAAAGAAAAAGAAGCTCACCCAGGAGCAGGCTCAGCTTCCAGAA
CCTTTAGGAACTGATATAAAAAAGGATGAAGATTGCCTCCAGACTCCTCCTAAGCCTCCACCAACACCAC
CCAGCAGTTCCTTAAACAAGAAAAGAAAAAGTAGGAGAGAAGAAGAGACTGGAGTGAAAAAGAGCAAGGC
GGCTAAGGAACCAGATCAGCCTCCCTGTTGTGAAGAACCCACAGCCAGGTGCCAGTCACCAATACTCCAC
AGCTCATCTTCAGCTTCATCTAACATTCCTTCAGCTACGAACCAAAAACCACAACCCCAGAACCAGAACA
TTCCCAGAGGTGCTGTTCTCCACTCAGAGCCCCTGACAGTGATGGTGCTCACTGCAACAGACCCGTTTGA
ATATGAATCACCAGAACATGAAGTAAAGAACATGTTTCATGCTACAGTGGCTACAGTGAGCCAGTATTTC
CATGTGAAAGTTTTCAACATCAACTTGAAAGAGAAGTTCACAAAAAAGAATTTTATCATCATATCCAATT
ACTTTGAGAGCAAAGGCATCCTGGAGATCAATGAGACTTCCTCTGTGTTAAAGGCTGATCCTGACCAAAT
GATTGAAGTGCCCAACAATATTATCAGAAATGCAAATGCCAGTCCTAAGATCTGTGATATTCAAAAGGGT
ACTTCTGGAGCAGTGTTCTATGGAGTGTTTACATTACACAAGAAAAAAGTGAAAACACAGAACACAAGCT
ATGAAATAAAAGATGGTTCAGGAAGTATAGAAGTGGAGGGGAGTGGACAATGGCACAACATCAACTGTAA
GGAAGGAGATAAGCTCCACCTCTTCTGCTTTCACCTGAAAAGAGAAAGAGGACAACCAAAGTTAGTGTGT
GGAGACCACAGTTTCGTCAAGATCAAGGTCACCAAGGCTGGGAAAAAAAAGGAAGCATCAACTGTCCTGT
CAAGCACAAAAAATGAAGAAGAAAATAATTACCCAAAAGATGGAATTAAGGTAGAGATGCCAGACTATCA
CGTCTAA

Translation (538 aa):
MAEYKKIVLLKGLESMEDYQFRTVKSLLRKELKLTKKLQEDYDRIQLADWMEDKFPKYAGLDKLIKVCEH
IKDLKDLAKKLKTEKAKVQKKKQGKCKTAVKKKGQDELSSSESLFINKESYKSVPSSKKKGKAIAKTEGE
KKNKLTQDQDHLPETSGTDIKTEEDCLQNSPKPPPTSPSSSSNKKKRKEITKTEGGKKKKLTQEQAQLPE
PLGTDIKKDEDCLQTPPKPPPTPPSSSLNKKRKSRREEETGVKKSKAAKEPDQPPCCEEPTARCQSPILH
SSSSASSNIPSATNQKPQPQNQNIPRGAVLHSEPLTVMVLTATDPFEYESPEHEVKNMFHATVATVSQYF
HVKVFNINLKEKFTKKNFIIISNYFESKGILEINETSSVLKADPDQMIEVPNNIIRNANASPKICDIQKG
TSGAVFYGVFTLHKKKVKTQNTSYEIKDGSGSIEVEGSGQWHNINCKEGDKLHLFCFHLKRERGQPKLVC
GDHSFVKIKVTKAGKKKEASTVLSSTKNEEENNYPKDGIKVEMPDYHV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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