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Report for CCDS48490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48490.1 Public Mus musculus 1 Cd34 23 108 98 CCDS HistoryNCBI Gene:12490Re-query CCDS DB by CCDS ID:48490.1Re-query CCDS DB by GeneID:12490See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48490.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110815.8 ENSMUSP00000106439.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110815.8Link to Ensembl Protein Viewer:ENSMUSP00000106439.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110815Re-query CCDS DB by Protein ID:ENSMUSP00000106439
Original member NCBI NM_001111059.1 NP_001104529.1 Updated not alive Link to Nucleotide Sequence:NM_001111059.1Link to Protein Sequence:NP_001104529.1Re-query CCDS DB by Nucleotide ID:NM_001111059Re-query CCDS DB by Protein ID:NP_001104529
Current member NCBI NM_001111059.2 NP_001104529.1 Accepted alive Link to Nucleotide Sequence:NM_001111059.2Link to Protein Sequence:NP_001104529.1Re-query CCDS DB by Nucleotide ID:NM_001111059Re-query CCDS DB by Protein ID:NP_001104529Link to BLAST:NP_001104529.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104529.1 325 Q64314-2 325 100% 0 0

Chromosomal Locations for CCDS 48490.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 194938966 194939044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194947839 194948006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194949305 194949564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194950939 194951019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194958417 194958573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194958810 194958862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194959066 194959230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 194959780 194959794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGCAGGTCCACAGGGACACGCGCGCGGGGCTCCTGCTGCCATGGCGCTGGGTAGCTCTCTGCCTGATGA
GTCTGCTGCATCTAAATAACTTGACTTCTGCTACCACGGAGACTTCTACACAAGGAATATCCCCATCAGT
TCCTACCAATGAGTCTGTTGAGGAAAATATCACATCTAGCATCCCTGGAAGTACCAGCCACTACTTGATC
TATCAGGACAGCAGTAAGACCACACCAGCCATCTCAGAGACTATGGTCAACTTTACAGTTACCTCTGGGA
TCCCTTCAGGCTCTGGAACTCCACACACTTTTTCACAACCACAGACTTCCCCAACTGGCATACTGCCTAC
TACTTCAGACAGTATTTCCACTTCAGAGATGACCTGGAAGTCCAGCCTGCCATCTATAAATGTTTCTGAT
TATTCGCCTAATAATAGCAGCTTTGAGATGACATCACCCACCGAGCCATATGCTTACACATCATCTTCTG
CTCCGAGTGCCATTAAGGGAGAAATCAAATGCTCTGGAATCCGAGAAGTGAGGTTGGCCCAGGGTATCTG
CCTGGAACTAAGTGAAGCATCTAGTTGTGAGGAGTTTAAGAAGGAAAAGGGAGAAGATCTAATTCAAATA
CTGTGTGAAAAGGAGGAGGCTGAGGCTGATGCTGGTGCTAGTGTCTGCTCCCTGCTTCTAGCCCAGTCTG
AGGTTAGGCCTGAGTGTTTGCTGATGGTCTTGGCCAATAGCACAGAACTTCCCAGCAAACTCCAGCTTAT
GGAAAAGCACCAATCTGACTTGAGAAAGCTGGGGATCCAAAGCTTCAATAAACAAGATATCGGGAGCCAC
CAGAGCTATTCCCGAAAGACTCTTATTGCATTGGTCACCTCTGGAGTTCTGCTGGCCATCTTGGGCACCA
CTGGTTATTTCCTGATGAACCGTCGCAGTTGGAGCCCTACAGGAGAAAGGCTGGAGCTGGAACCTTGA

Translation (325 aa):
MQVHRDTRAGLLLPWRWVALCLMSLLHLNNLTSATTETSTQGISPSVPTNESVEENITSSIPGSTSHYLI
YQDSSKTTPAISETMVNFTVTSGIPSGSGTPHTFSQPQTSPTGILPTTSDSISTSEMTWKSSLPSINVSD
YSPNNSSFEMTSPTEPYAYTSSSAPSAIKGEIKCSGIREVRLAQGICLELSEASSCEEFKKEKGEDLIQI
LCEKEEAEADAGASVCSLLLAQSEVRPECLLMVLANSTELPSKLQLMEKHQSDLRKLGIQSFNKQDIGSH
QSYSRKTLIALVTSGVLLAILGTTGYFLMNRRSWSPTGERLELEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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