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Report for CCDS48622.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48622.1 Public Mus musculus 10 Plppr3 23 108 98 CCDS HistoryNCBI Gene:216152Re-query CCDS DB by CCDS ID:48622.1Re-query CCDS DB by GeneID:216152See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48622.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167250.7 ENSMUSP00000130695.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167250.7Link to Ensembl Protein Viewer:ENSMUSP00000130695.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167250Re-query CCDS DB by Protein ID:ENSMUSP00000130695
Original member Current member NCBI NM_001170935.1 NP_001164406.1 Accepted alive Link to Nucleotide Sequence:NM_001170935.1Link to Protein Sequence:NP_001164406.1Re-query CCDS DB by Nucleotide ID:NM_001170935Re-query CCDS DB by Protein ID:NP_001164406Link to BLAST:NP_001164406.1

Chromosomal Locations for CCDS 48622.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79861697 79861796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79862435 79862480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79865788 79866181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79866412 79866585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79866668 79866725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79866835 79867030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79867172 79867307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79867388 79867573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79874020 79874094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGCTTGCTATGAAGGAGAAGAATAAAACGCCGAAGGACAGCATGACACTCCTGCCTTGCTTTTATTTCG
TGGAGCTACCCATCGTGGCTTCCTCCATTGTGTCTCTGTACTTCCTGGAGCTGACTGACCTGTTCAAGCC
GGCCAAGGTGGGCTTTCAGTGCTACGACCGCGCCCTGTCCATGCCCTATGTGGAGACAAATGAAGAGCTG
ATCCCATTGCTCATGCTGCTGAGCCTGGCCTTCGCTGCACCTGCGGCCTCAATCATGGTCGGCGAGGGCA
TGGTCTACTGTCTGCAGTCCAGGCTCTGGGGCCGTGGTCCAGGGGGCGTGGAGGGCAGCATCAACGCTGG
TGGCTGCAACTTCAACTCCTTCCTCCGGCGCACAGTGCGCTTTGTGGGTGTACACGTGTTTGGCCTGTGT
GCCACGGCTCTGGTGACAGATGTCATCCAGCTGGCCACCGGCTACCACACACCTTTCTTCTTAACGGTCT
GCAAACCCAATTACACCCTGCTGGGCACTTCCTGTGAGTCGAACCCTTACATCACACAGGACATCTGCTC
TGGCCACGATACCCATGCCATCCTGTCAGCAAGGAAGACCTTCCCGTCCCAGCACGCCACTCTGTCAGCC
TTTGCTGCTGTCTACGTGTCGATGTACTTCAACGCGGTTATCTCGGACACCACGAAGCTGCTGAAGCCCA
TCCTTGTGTTTGCCTTCGCCATTGCTGCGGGCGTCTGCGGCCTCACACAGATCACCCAGTATCGAAGCCA
CCCTGTGGACGTCTACGCTGGCTTTCTTATCGGTGCTGGCATCGCTGCCTACCTGGCCTGCCACGCTGTG
GGCAACTTCCAGGCACCACCTGCAGAAAAGGTTCCTACCCCAGCTCCTGCCAAGGACGCCCTGCGAGCGC
TGACACAGCGGGGCCATGAGTCCATGTATCAGCAGAATAAGTCTGTCAGTACCGATGAGCTGGGCCCTCC
AGGGAGGCTAGAGGGCGTGCCTCGGCCTGTGGCTCGAGAGAAGACATCTCTTGGCAGCCTGAAGCGAGCC
AGCGTGGATGTGGACCTGCTGGCCCCACGTAGCCCCATGGGCAAAGAAGGCATGGTCACCTTCAGCAACA
CACTGCCCCGGGTCAGCACGCCCTCGCTGGATGACCCTGCACGGCGCCACATGACTATCCACGTGCCCCT
TGATGCCTCCCGTTCCAGGCAGCTTATCGGATCTTCACCCGCTGCACATCACCGTAGACGCCTTGGAAAC
CCAGGCAACAACAGGAAGCAGAAGAACCGTGCAGTCAGTTGGCAAAGAAATTCCGGATCAGGCAAGAAAA
AAAATGGGAGGGGAGGGGAGGAAAGAAAAAAGTAG

Translation (454 aa):
MLAMKEKNKTPKDSMTLLPCFYFVELPIVASSIVSLYFLELTDLFKPAKVGFQCYDRALSMPYVETNEEL
IPLLMLLSLAFAAPAASIMVGEGMVYCLQSRLWGRGPGGVEGSINAGGCNFNSFLRRTVRFVGVHVFGLC
ATALVTDVIQLATGYHTPFFLTVCKPNYTLLGTSCESNPYITQDICSGHDTHAILSARKTFPSQHATLSA
FAAVYVSMYFNAVISDTTKLLKPILVFAFAIAAGVCGLTQITQYRSHPVDVYAGFLIGAGIAAYLACHAV
GNFQAPPAEKVPTPAPAKDALRALTQRGHESMYQQNKSVSTDELGPPGRLEGVPRPVAREKTSLGSLKRA
SVDVDLLAPRSPMGKEGMVTFSNTLPRVSTPSLDDPARRHMTIHVPLDASRSRQLIGSSPAAHHRRRLGN
PGNNRKQKNRAVSWQRNSGSGKKKNGRGGEERKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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