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Report for CCDS48623.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48623.1 Reviewed, update pending Mus musculus 10 Med16 23 108 98 CCDS HistoryNCBI Gene:216154Re-query CCDS DB by CCDS ID:48623.1Re-query CCDS DB by GeneID:216154See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 48623.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105378.8 ENSMUSP00000101017.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105378.8Link to Ensembl Protein Viewer:ENSMUSP00000101017.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105378Re-query CCDS DB by Protein ID:ENSMUSP00000101017
Original member NCBI NM_001163276.1 NP_001156748.1 Updated not alive Link to Nucleotide Sequence:NM_001163276.1Link to Protein Sequence:NP_001156748.1Re-query CCDS DB by Nucleotide ID:NM_001163276Re-query CCDS DB by Protein ID:NP_001156748
Current member NCBI NM_001163276.2 NP_001156748.2 Pending alive Link to Nucleotide Sequence:NM_001163276.2Link to Protein Sequence:NP_001156748.2Re-query CCDS DB by Nucleotide ID:NM_001163276Re-query CCDS DB by Protein ID:NP_001156748Link to BLAST:NP_001156748.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156748.2 828 Q6PGF3 828 100% 0 0

Chromosomal Locations for CCDS 48623.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79895284 79895410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79895627 79895710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79896348 79896564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79896759 79896951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79897565 79897698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79898236 79898446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79898897 79899103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79899201 79899409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79900097 79900252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79902423 79902528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79902997 79903428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79906765 79906934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79907039 79907146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79907491 79907653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79908818 79908895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2595 nt):
ATGGCGGCGTCGGATCCCGGGCGTTGGGGCGAGTGTGGACCGCGGCCGCCGGGCCGACTGGGCGCCCGGG
GCGGACAGCCAGGGACCGTGCTGGGTGCGGTGGGTATGATGGACCTGGCCTATGTGTGCGAATGGGAGAA
GTGGGCCAAGAGCACGTACTGCCCGTCGCTGCCCCTGGCTTGTGCCTGGTCCTGCAGGAACCTCATTGCC
TTCACCACAGACCTACGCAATGATGACCAGGATCTGACACACATGATCCATATCCTAGACACGGAACACC
CCTGGGAAGTGCACTCTGTCAGCTCTGGCCACAGCGAGGCCATCACCTGCCTGGAGTGGGACCAGTCAGG
GTCCCGGCTACTGTCTGCTGATGCTGATGGACAGATCAAATGCTGGAGCATGGCTGACCACCTGGCCAAC
AGCTGGGAGAGCTCGGTGGGCAGCCAGGTGGAGGGGGACCCCATCGTGGCCCTGTCCTGGCTGCACAACG
GTGTAAAGCTGGCCCTGCATGTGGAGAAGTCTGGTGCCTCTAGCTTCGGAGAGAAGTTCTCACGTGTGAA
GTTCTCCCCGTCCCTCACGCTGTTCGGTGGCAAGCCAATGGAGGGTTGGATTGCAGTGACAGTCAGTGGC
CTGGTCACTGTGTCCCTTCTGAAGCCCAGCGGGCAGGTGCTGACGTCCACGGAGAGCCTGTGCCGGCTGC
GTGGTAGAGTGGCGCTGGCTGACATCGCCTTCACGGGCGGTGGGAACATTGTGGTGGCTGCTGCAGATGG
CAGCAGCGCGTCACCCGTGAAGTTCTATAAGGTGTGCGTCAGCGTGGTCAGCGAGAAGTGCCGCATCGAC
ACGGAGATCCTGCCCTCACTGTTTATGCGCTGCACCACCGACCCCAACCGCAAAGACAGGTTCCCCGCCA
TCACACACCTCAAGTTCCTGGCGCGAGACATGTCTGAGCAGGTGCTCCTGTGTGCGTCCAGCCAGACCAG
CAGCCTGGTGGAATGCTGGTCCCTTCGGAAAGAGGGCCTTCCTGTGAACAATATCTTCCAGCAGATCTCG
CCTGTGGTTGGTGACAAACAGCCCATGATCCTCAAGTGGCGAATCCTGTCGGCCACCAATGACCTGGACC
GTGTATCCGCGGTGGCACTGCCGAAACTGCCCATCTCACTCACCAACACTGACCTCAAGGTGGCCAGTGA
CACCCAGTTCTATCCAGGCCTTGGCTTAGCGCTGGCCTTCCAGGATGGCAGCGTGCACATGGTGCACCGA
CTGTCCCTGCAGACCATGGCGGTGTTCTACAGCTCAGCCCCGCGCTCGCTGGATGAGCCGGCCCTAAAGC
GCCCACGCACCACATGCCCTGCCGTACACTTTAAAGCCATGCAGCTGTCCTGGACTTCGCTGGCCCTCGT
GGGCATCGATAACCATGGGAAGCTCAGCATGCTGCGAATCTCTCCATCCCTGGGCCACCCACTGGAGCCC
AAGCTGGCCCTGCAGCACCTGCTTTTCCTGCTGGAATACTGCATGGTGACCGGCTATGACTGGTGGGACA
TCCTGCTACACGTGCAGCCCGGCATGGTGCAGAGCCTGGTGGAGCGGCTGCATGAGGAGTACACTCGCCA
GAAGCCCGCCCTGCAACAGGTCCTCTCCACTCGGATCCTGGCCATGAAGGCTTCACTGTGCAAGCTGTCA
CCCTGCACAGTGGCTCGTGTGTGTGACTACCACACCAAGCTGTTCCTCATGGCCATCACGTCCACCCTAA
AGTCGCTGCTGCGCCCACACTTCCTCAACACCCCTGACAAGAGCCCTGGGGACCGCCTGGCCGAGATCTG
CGCCAAGATCACCGATGTTGACATCGACAAAGTCATGATCAACCTGAAGACTGAAGAGTTCGTCCTTGAC
ATGAACACTTTGCAGGCGCTGCAGCAGTTGCTACAGTGGGTGGGAGACTTCGTGCTCTACCTCCTGGTCA
GCCTGCCCAACCAGGGCTCCCCGCTAAGGCCGGGCCACAGCTTCCTCCGAGATGGTACCTCCCTGGGCAT
GCTGCGAGAGTTGATGGTTGTCATCCGAATCTGGGGCCTGCTGAAGCCCAGCTGTCTGCCCGTCTACACA
GCCACCTCGGACACCCAGGACAGCATGTCCCTGCTCTTCCGACTGCTCACCAAACTGTGGATCTGCTGCC
GTGATGAGGGCGCAGCCAGTGAACCAGATGAGGGTTTGGTGGATGAATGCTGCCTGCTGCCTAGCCAGCT
GCTGGTCCCCAACTTGGACTGGCTTCCCGCCAGTGATGGCCTGGTCAGTCGCCTGCAGCCCAAACAGCCC
CTGCGCCTGCGCTTCGGCAGAGCGCCCACTCTGCCCAGCAGCACCTCCACCCTGCAGCTGGACGGCCTCA
CCAGGGCCCCTGGCCAGCCCAAGATCGACCACCTCCGGAGGCTACACCTGGGCGCCTACCCCACCGAGGA
GTGCAAAGCCTGCACCAGGTGTGGCTGTGTCACCATGCTGAAGTCTCCCAACAAGACAACCGCTGTGACA
CAGTGGGAACAGCGGTGGATCAAGAATTGCCTGTGTGGTGGGCTGTGGCGGCGAGTGCCTCTCAGCTGTT
CCTGA

Translation (864 aa):
MAASDPGRWGECGPRPPGRLGARGGQPGTVLGAVGMMDLAYVCEWEKWAKSTYCPSLPLACAWSCRNLIA
FTTDLRNDDQDLTHMIHILDTEHPWEVHSVSSGHSEAITCLEWDQSGSRLLSADADGQIKCWSMADHLAN
SWESSVGSQVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSG
LVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVAAADGSSASPVKFYKVCVSVVSEKCRID
TEILPSLFMRCTTDPNRKDRFPAITHLKFLARDMSEQVLLCASSQTSSLVECWSLRKEGLPVNNIFQQIS
PVVGDKQPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFQDGSVHMVHR
LSLQTMAVFYSSAPRSLDEPALKRPRTTCPAVHFKAMQLSWTSLALVGIDNHGKLSMLRISPSLGHPLEP
KLALQHLLFLLEYCMVTGYDWWDILLHVQPGMVQSLVERLHEEYTRQKPALQQVLSTRILAMKASLCKLS
PCTVARVCDYHTKLFLMAITSTLKSLLRPHFLNTPDKSPGDRLAEICAKITDVDIDKVMINLKTEEFVLD
MNTLQALQQLLQWVGDFVLYLLVSLPNQGSPLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYT
ATSDTQDSMSLLFRLLTKLWICCRDEGAASEPDEGLVDECCLLPSQLLVPNLDWLPASDGLVSRLQPKQP
LRLRFGRAPTLPSSTSTLQLDGLTRAPGQPKIDHLRRLHLGAYPTEECKACTRCGCVTMLKSPNKTTAVT
QWEQRWIKNCLCGGLWRRVPLSCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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