NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48664.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48664.1 Public Mus musculus 10 Washc3 23 108 98 CCDS HistoryNCBI Gene:67282Re-query CCDS DB by CCDS ID:48664.1Re-query CCDS DB by GeneID:67282See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48664.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171151.8 ENSMUSP00000132246.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171151.8Link to Ensembl Protein Viewer:ENSMUSP00000132246.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171151Re-query CCDS DB by Protein ID:ENSMUSP00000132246
Original member NCBI NM_027487.1 NP_081763.1 Updated not alive Link to Nucleotide Sequence:NM_027487.1Link to Protein Sequence:NP_081763.1Re-query CCDS DB by Nucleotide ID:NM_027487Re-query CCDS DB by Protein ID:NP_081763
Current member NCBI NM_027487.2 NP_081763.1 Accepted alive Link to Nucleotide Sequence:NM_027487.2Link to Protein Sequence:NP_081763.1Re-query CCDS DB by Nucleotide ID:NM_027487Re-query CCDS DB by Protein ID:NP_081763Link to BLAST:NP_081763.1

Chromosomal Locations for CCDS 48664.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 88201242 88201292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88201812 88201910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88213647 88213712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88215967 88216074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88219250 88219360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88225032 88225136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (540 nt):
ATGGATGAGGATGGGCTTCCTCTCATGGGGTCAGGCATAGACCTGACCAAGGTGCCAGCTATTCAACAGA
AAAGAACCGTGGCCTTTCTAAACCAGTTTGTGGTGCACACTGTGCAGTTTCTCAACCGGTTTTCCGCAGT
TTGTGAGGAGAAACTGGCAGACCTTTCTCTCCGGATTCAGCAAATTGAAACAACTCTCAATATTTTAGAT
GCAAAGCTGTCATCTATCCCAGGCCTAGAGGACGTCACAGTTGAAGTGTCTCCTTTAAATGTCACTGCTG
TCACAAACGGATCACATTCTGAAACCACTTCGGAGCAAACGCAGCAGAATAGCACGCAAGACTCTGGAGC
ACAGGAGAGTGAAGCGCCATCAGAAAATGTCCTGACCGTAGCCAAGGATCCACGGTATGCCAGATACCTC
AAGATGGTTCAAGTGTTCCTGTCCACAGAACAGGAAGCAGTACCTTGCATCTTGGCTTCGACGCCCTTTA
CGGTTACACATCTTGGGATGTGGAAACACTGCAGAAAGCAGTTGTTTTGA

Translation (179 aa):
MDEDGLPLMGSGIDLTKVPAIQQKRTVAFLNQFVVHTVQFLNRFSAVCEEKLADLSLRIQQIETTLNILD
AKLSSIPGLEDVTVEVSPLNVTAVTNGSHSETTSEQTQQNSTQDSGAQESEAPSENVLTVAKDPRYARYL
KMVQVFLSTEQEAVPCILASTPFTVTHLGMWKHCRKQLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH