NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48709.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48709.1 Public Mus musculus 10 Tafa2 23 108 98 CCDS HistoryNCBI Gene:268354Re-query CCDS DB by CCDS ID:48709.1Re-query CCDS DB by GeneID:268354See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48709.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050756.7 ENSMUSP00000050199.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050756.7Link to Ensembl Protein Viewer:ENSMUSP00000050199.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000050756Re-query CCDS DB by Protein ID:ENSMUSP00000050199
Original member Current member NCBI NM_182807.3 NP_877959.2 Accepted alive Link to Nucleotide Sequence:NM_182807.3Link to Protein Sequence:NP_877959.2Re-query CCDS DB by Nucleotide ID:NM_182807Re-query CCDS DB by Protein ID:NP_877959Link to BLAST:NP_877959.2

Chromosomal Locations for CCDS 48709.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 123430913 123430923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 123593494 123593600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 123704359 123704511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 123705700 123705824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 123738904 123738915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (408 nt):
ATGATCACCAAGATGAATAAGAGATACTTGCAGAAAGCAACACAAGGAAAGCTTCTGATAATTATTTTTA
TAGTGACCTTGTGGGGGAAAGCCGTTTCCAGCGCCAACCATCACAAAGCTCACCATGTTAGAACTGGGAC
TTGCGAGGTTGTGGCGCTGCACAGATGCTGTAATAAGAACAAGATAGAAGAACGGTCCCAAACGGTCAAG
TGCTCCTGCTTCCCTGGGCAGGTGGCAGGCACTACCCGAGCTGCTCCGTCTTGTGTGGATGCATCCATAG
TGGAACAAAAGTGGTGGTGTCATATGCAGCCATGCCTGGAGGGAGAGGAATGTAAAGTCCTTCCAGATCG
CAAAGGATGGAGCTGTTCCTCTGGAAACAAAGTAAAAACAACTAGGGTAACCCATTAA

Translation (135 aa):
MITKMNKRYLQKATQGKLLIIIFIVTLWGKAVSSANHHKAHHVRTGTCEVVALHRCCNKNKIEERSQTVK
CSCFPGQVAGTTRAAPSCVDASIVEQKWWCHMQPCLEGEECKVLPDRKGWSCSSGNKVKTTRVTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH