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Report for CCDS48879.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48879.1 Public Mus musculus 11 Tspoap1 23 108 98 CCDS HistoryNCBI Gene:207777Re-query CCDS DB by CCDS ID:48879.1Re-query CCDS DB by GeneID:207777See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48879.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039627.11 ENSMUSP00000048063.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039627.11Link to Ensembl Protein Viewer:ENSMUSP00000048063.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000039627Re-query CCDS DB by Protein ID:ENSMUSP00000048063
Original member Current member NCBI NM_172449.2 NP_766037.2 Accepted alive Link to Nucleotide Sequence:NM_172449.2Link to Protein Sequence:NP_766037.2Re-query CCDS DB by Nucleotide ID:NM_172449Re-query CCDS DB by Protein ID:NP_766037Link to BLAST:NP_766037.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766037.2 1846 Q7TNF8-1 1846 100% 0 0

Chromosomal Locations for CCDS 48879.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 87761402 87761728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87762437 87762544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87762781 87762909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87763460 87763639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87764198 87764383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87765628 87765705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87765793 87765876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87766113 87766202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87766366 87766488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87766717 87766821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87768430 87768480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87768801 87768821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87769678 87769882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87770411 87770583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87771659 87771774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87772057 87772166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87774524 87775354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87775502 87775653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87775973 87776338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87776425 87776664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87777047 87777235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87777767 87778606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87779229 87779328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87779425 87779576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87780203 87780371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87780882 87780953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87781302 87781334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87781490 87781593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87781682 87781753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87781945 87782049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87782660 87782689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5541 nt):
ATGGAGCAACTGACAACCCTCCCACGGCTTGGAGACCTTGGAGCCATGGAGCCATGGGCACTGCCTGCCT
GGCAGCACTGGACTCAGGGCCAGGGGTGCAAACCTGGAGATGCATCTCCAAGCATTGCTGGTACTCCGAC
AGCTCTGCAGGTTAAAGGATTGAGGTTTGAAGAGAGTTCCAAGCCTGAGGGAGCTCATAGCCCTGGACCT
GTCGGAAATACTGATCCTGAAGCAACAGAGACCGGGCTGCCTAAGCTGGGGCAGCAAGCAGAGAGCCCTG
GGTACAGCTGTTCCGGGCTGGAGGAGGAGGAGGCACAGGCTTATAAGGCCAAGTTCAACATAGGCTTCGG
GGACAGGCCTAATCTGGAGCTGCTAAGGGCCCTGGGAGAGCTGCAGCAGCGCTGTACCATCCTGAAGGAG
GAAAACCAGATGCTGAGAAAAAGCAGCTTCCCAGAGACGGAGGAGAAGGTACGGAGGCTGAAGCGGAAGA
ATGCTGAACTGGCAGTCATTGCCAAGCGCCTGGAGGAGAGGGCACAGAAGCTGCAGGAAACGAACATGAG
GGTGGTGAGTGCCCCTGTGCCCCGACCCGGATCCAGTTTGGAGTTGTGCCGTAAGGCTCTAGCTCGCCAG
CGAGCCCGAGACCTCAGTGAGACAGCCAGTGCACTGTTGGCCAAGGACAAACAGATTGCTGCCTTGCAGC
GGGAGTGCAGGGAGCTGCAGGCCAGACTCTCTCTGGTGGGCAAGGAAGGTCCCCAGTGGCTGCATATGCG
GGACTTCGACCGGTTGCTGCGCGAGTCCCAACGGGAGGTGCTGCGGCTGCAGAGGCAGATCGCCCTGCGC
AACCAGCGGGAGCCGCTCCGGCCTGCCCGGTCCCCGGGTCCTACTGCCCCATCTAGAGTAGGGGCGCCGG
CCCCCGGGGCCCCGGGAGAGGCCGTACTTCAGGATGATGTGGAGAGCCCACAGGTAGTCCTAAGGGAACC
AGAGAAGCAGCAAAGGGTGCAGCAGCTGGAGTCTGAGCTCTGCAAGAAGCGAAAGAAATGCGAGAGTCTG
GAGCAGGAAGCCAGGAAAAAGCAGAGGCGATGTGAGGAGCTGGAGCTACAGCTGAGGGCAGCCCAGAATG
AAAATGCCCGCCTGGTGGAGGAGAACTCTCGGCTCAGTGGGAGAGCCACAGAGAAGGAGCAGGTGGAATG
GGAGAATTCGGAGCTGAAGGGACAGCTCCTGGGGGTGACACAAGAGAGGGACTCGGCCCTTCTTAAGAGC
CAGGGCCTGCAAAGCAAGCTGGAGAGCCTGGAGCAGGTGCTGAAGCATATGCGGGAGGTGGCCCAGCGCC
GGCAGCAGCTGGAGGTGGAGCATGAGCAGGCTAGGCTCAGCCTGCAGGAGAAGCAGGAGGAGGTCCGGAG
GCTGCAGCAGGCCCAGGCAGAAGCCAAGAGGGAACATGAGGGAGCCGTTCAGCTGCTGGAGTCTACCTTG
GATTCCATGCAGGCCCGGGTTCGAGAGCTTGAGGGCCAGTGCCGAAGCCAGACTGAGCGTTTCAGCCTTC
TGGCTCAGGAGCTCCAGGCCTTCCGTCTGCACCCAGGCCCTCTGGATCTGCTTACTTCAGCCTTGGGCTG
TAGTGCCCTTGGGGACCACCCGCCCCCCCACTGCTGCTGCTCTATCCCTCAGCCCTGCCAGGGGTCCGGC
CCCAAAGATCTTGACCTCCCACCGGGCTCCCCAGGACGCTGCACCCCCAAATCTTCTGAACCTGCTCTCA
CCACCCTTACTGGAATCCCTCGAAGGACAGCTAAGAAGGCCGAGTCTCTTTCTAATTCTTCTCGCTCAGA
GTCCATCCACAACAGCCCCAAGTCATGTCCCACACCAGAGGTGGACACAGCCAGTGAGGTGGAGGAACTG
GAGGTAGACAGTGTTTCCCTGCTCCCAGCAGCTCCGGAGAGTCACTCGGGAGGAGCCAGAATCCAGGTCT
TCCTAGCACGCTATAGCTACAACCCCTTTGAGGGTCCCAATGAGAATCCAGAGGCCGAGCTTCCTCTGAC
AGCGGGCGAGTATATCTACATCTATGGTAACATGGACGAGGATGGCTTTTTTGAAGGGGAGCTCATGGAT
GGCCGAAGGGGCCTGGTCCCTTCCAACTTTGTAGAGCGCGTGTCTGATGATGATCTTCTGTCCACCCTCC
CTCGGGAGCTGGCTGATTCGTCGCACAGCTCAGGCCCCGAGCTCAGTTTCCTGAGTGGAGGCGGGGGTGG
TTGCAGTAGTGGGGGCCAGAGCAGCGGGGGACGTAGCCAGCCCAGACCAGAGGAGGAGGCCGCAGGAGAT
GAACTCAGTCTGAGCCCCCCACCAGAGGGACTTGGCGAGCCTCTGGCTGTGCCTTACCCCCGACACATCA
CGGTTCTCAAGCAGTTAGCCCACAGTGTGGTGCTGGCCTGGGAGTTGCCTCCTGAGAGAGTAGATCTGCG
TGGCTTCCATATCTTTGTCAATGGGGAACTCCGTCAGGCCTTGGGGCCTGGGGTGCCCCCCAAAGCTGTG
CTTGAAAACATGGACCTGCGGACTGGGCCTCTCCATGTGTCTGTCCAGGCCCTAACCAGCAAGGGCAGCT
CAGACCCTCTGCGCTGTTGCCTGGCTGTGGGTGCCGGGGCTGGGGTGGTACCCAGCCAGCTGCGGATCCA
TCGGCTGACAGCCACATCTGCTGAGATCGCCTGGGTGCCGGGGAATAGCAACTTGGCCCATGCCATCTAC
CTCAATGGAGAAGAGTGCCCACCTGCTCGCCCCAGCACATATTGGGCAACCTTTTGTAACCTGAGACCTG
GCACACTCTATCAGGCCCGAGTGGAGGCTCAGATCCCATCTCAGGGGCCTTGGGAACCAGGCTGGGAGAG
GCCAGAGCAGAGAGCTGCTACCTTGCAGTTCACCACACTTCCAGCAGGTCTGCCTGATGCCCCACTGGAT
GTACAGGCTGAACCAGGACCCTCTCCTGGAATCTTGATGATCAGTTGGCTCCCTGTCACCATTGATGCTG
CTGGTACCTCCAATGGTGTCCGGGTTACAGGCTATGCCATCTATGCTGATGGGCAGAAGATTATGGAGGT
GGCTTCCCCCACAGCAGGCAGTGTGCTGGTGGAGGTGTCCCAGCTGCAGCTGTTGCAGGCCTGCCATGAG
GTGACTGTACGCACTATGTCACCCCATGGCGAGTCCAGTGACTCCATCCCGGCCCCCGTTGCCCCAGCCC
TGGCTTCTGCCTGCCAGCCAGCCAGGATGTCCTGTCTCTCACCACGACCAAGCCCAGAGGTCAGAACACC
CCTTGCTTCAGTCTCCCCAGGGCTTGGGGATACCAGCTTTCCCCTCCGGCATCCTGTCCCCCATGGAACT
CAAGATTTCTCTGCAAGTCTTTCCATAGAGATGTCCAAAGGACCCCAGGAGGAACCTCCAGTCCCTTGCT
CTCAGGAAGAGGCTGGGGCAGCTGTGCGGAGCATCTCAGAAGAGAAGAGGGCTATCGAGCCAACTCTGGG
CCAGGAAGGCCCTGAGCCTGTGGCTCCTTCCCTGGCTAAGCAGGAAGTGGAGTGCACTTCAGGAGATGCT
GGCCCTGTACCTTGCTCCACCCAAGGAGAGCTGACCCAGAAGAAGCCAAGTATTGAAGCCTGCCATGGGG
GAGATCTGGACTCCGGGCTGAAACTTAGATCTGAGAAAGAAGATATGTCAGAGCTTGGAGTTCACCTGGT
GAATTCCCTTGTGGATCACAGCCGCAACTCAGACTTATCAGACATCCAGGAAGAAGAGGAAGAGGAGGAA
GAAGAGGAAGAGGAACTGGGTTCCAGGCCTTGTTCCTCCCAGAAGCAGGTTGCTGGCAACAGCATCAGGG
AGAATGGAGCCAAGCCCCAGCCAGACCCCTTTTGTGAGACTGACAGCGACGAGGAGATCTTGGAGCAGAT
ACTGGAGTTGCCTCTCCAGCGGCTCTGCAGCAAGAAGCTGTTCAGCATCCCTGAGGAGGAAGAGGAGGAG
GAAGAGGAGGAAGGGCTGGAGAAACCAGGGCCCAGCCGCACTTCCCAAGACCCTAGCCAGCCTGAACTTG
CGTTGCTAGGGCCGGGCTGTGATAGCAGTCAGCCCCAGGGACCTGGCCTGTGTCCCTTGTCTCCTGAGCT
CTCTGGGGTCAGGGAGCACCTGGAGGATGTGCTGGGAGTCGTTGGTGGAAACGGCAGGAGGAGAGGAGGT
GGCTCCCCGGAGAAACTCCCAAACCGCAAGCGACCTCAGGACCCCCGAGAACATTGCAGCCGGCTTCTTG
GCAATGGCGGGCCCCAGGCCTCTGCACGGCCGGTCCCTCCACGGGAGAGGGGCAGCCTCCCTGTGATTGA
GGGCACCAGGGTTGGACAGGAGCCCGGTGGGAGAGGGCGGCCGGGTCTTTCCCGGAGGTGTCCCCGTGGC
CCTGCTCCAGAATCCAGCTTAGTCAGCTGCCTCTCTCCAAAGTGTTTGGAGATCAGTATTGAATATGATT
CTGAGGATGAGCAGGAGGCGGGCAGCGGGGGTGTCAGCATCAACAGCTCCTGCTACCCCACAGATGGGGA
GGCCTGGGGCACAGCGGCAGTAGGAAGGCCCAGGGGACCTCCGAAGGTCAATCCAGGCCCCAACGCCTAC
CTGCGCCTCCCAGCCTGGGAGAAAGGGGAGCCAGAGCGGAGAGGCCGCAGTGCGATTGGCAGAACCAAGG
AGCCACCCTCCCGGGCAACAGAAACTGGGGAGTCCAGAGGGCAGGACAACTCTGGGCGGAGAGGACCCCA
GAGGAGAGGGGCCCGGGTGCCTAGGTCTGGTACCACTGAGCTGGCCCCTCCAAGGAGCCCCCAAGAAGCA
CCACCTCATCAGGACCTGCCTGTGAGGGTCTTTGTGGCTCTGTTTGACTATGACCCTGTATCAATGTCAC
CGAACCCTGATGCCGGAGAAGAGGAACTGCCCTTTAAGGAGGGCCAACTCCTCAAGGTGTTTGGAGACAA
GGACGCTGATGGTTTCTACCGGGGTGAGAGTGGGGGCCGTACAGGCTACATCCCCTGCAACATGGTGGCT
GAGGTGGCTGTGGACAGTCCAGCAGGGAGACAACAGCTGCTCCAGCGGGGTTTCTTGCCCCCAAATGTTC
TCACCGAGGCCTCAGGAAATGGTCCCTCTGTGTACTCCTCAGCACACACACCCGGGCCTCCCCCCAAGCC
TCGTCGGTCCAAGAAAGTGGAGCTGGAAGGTCCTACACAGCTCTGTCCAGGTCCTCCTAAGCTGATTCAT
TCTGCTGCCCAGAAAACCTCCCGACCTATGGTGGCTGCATTTGACTATAATCCTCGGGAGAACTCCCCCA
ATATGGATGTGGAGGCAGAGCTGCCCTTCAGAGCAGGGGATGTCATTACTGTGTTTGGGAACATGGACGA
TGATGGTTTCTACTATGGGGAGCTGAATGGACAAAGGGGCCTGGTTCCATCCAACTTCCTGGAAGGCCCT
GGGCCTGAGTCAGGCAGCCTAGAGTCTGGGACATCTCAAGCCGAGAGTCAGAGAACGAGGAGGAGAAGAG
TCCAGTGCTAG

Translation (1846 aa):
MEQLTTLPRLGDLGAMEPWALPAWQHWTQGQGCKPGDASPSIAGTPTALQVKGLRFEESSKPEGAHSPGP
VGNTDPEATETGLPKLGQQAESPGYSCSGLEEEEAQAYKAKFNIGFGDRPNLELLRALGELQQRCTILKE
ENQMLRKSSFPETEEKVRRLKRKNAELAVIAKRLEERAQKLQETNMRVVSAPVPRPGSSLELCRKALARQ
RARDLSETASALLAKDKQIAALQRECRELQARLSLVGKEGPQWLHMRDFDRLLRESQREVLRLQRQIALR
NQREPLRPARSPGPTAPSRVGAPAPGAPGEAVLQDDVESPQVVLREPEKQQRVQQLESELCKKRKKCESL
EQEARKKQRRCEELELQLRAAQNENARLVEENSRLSGRATEKEQVEWENSELKGQLLGVTQERDSALLKS
QGLQSKLESLEQVLKHMREVAQRRQQLEVEHEQARLSLQEKQEEVRRLQQAQAEAKREHEGAVQLLESTL
DSMQARVRELEGQCRSQTERFSLLAQELQAFRLHPGPLDLLTSALGCSALGDHPPPHCCCSIPQPCQGSG
PKDLDLPPGSPGRCTPKSSEPALTTLTGIPRRTAKKAESLSNSSRSESIHNSPKSCPTPEVDTASEVEEL
EVDSVSLLPAAPESHSGGARIQVFLARYSYNPFEGPNENPEAELPLTAGEYIYIYGNMDEDGFFEGELMD
GRRGLVPSNFVERVSDDDLLSTLPRELADSSHSSGPELSFLSGGGGGCSSGGQSSGGRSQPRPEEEAAGD
ELSLSPPPEGLGEPLAVPYPRHITVLKQLAHSVVLAWELPPERVDLRGFHIFVNGELRQALGPGVPPKAV
LENMDLRTGPLHVSVQALTSKGSSDPLRCCLAVGAGAGVVPSQLRIHRLTATSAEIAWVPGNSNLAHAIY
LNGEECPPARPSTYWATFCNLRPGTLYQARVEAQIPSQGPWEPGWERPEQRAATLQFTTLPAGLPDAPLD
VQAEPGPSPGILMISWLPVTIDAAGTSNGVRVTGYAIYADGQKIMEVASPTAGSVLVEVSQLQLLQACHE
VTVRTMSPHGESSDSIPAPVAPALASACQPARMSCLSPRPSPEVRTPLASVSPGLGDTSFPLRHPVPHGT
QDFSASLSIEMSKGPQEEPPVPCSQEEAGAAVRSISEEKRAIEPTLGQEGPEPVAPSLAKQEVECTSGDA
GPVPCSTQGELTQKKPSIEACHGGDLDSGLKLRSEKEDMSELGVHLVNSLVDHSRNSDLSDIQEEEEEEE
EEEEELGSRPCSSQKQVAGNSIRENGAKPQPDPFCETDSDEEILEQILELPLQRLCSKKLFSIPEEEEEE
EEEEGLEKPGPSRTSQDPSQPELALLGPGCDSSQPQGPGLCPLSPELSGVREHLEDVLGVVGGNGRRRGG
GSPEKLPNRKRPQDPREHCSRLLGNGGPQASARPVPPRERGSLPVIEGTRVGQEPGGRGRPGLSRRCPRG
PAPESSLVSCLSPKCLEISIEYDSEDEQEAGSGGVSINSSCYPTDGEAWGTAAVGRPRGPPKVNPGPNAY
LRLPAWEKGEPERRGRSAIGRTKEPPSRATETGESRGQDNSGRRGPQRRGARVPRSGTTELAPPRSPQEA
PPHQDLPVRVFVALFDYDPVSMSPNPDAGEEELPFKEGQLLKVFGDKDADGFYRGESGGRTGYIPCNMVA
EVAVDSPAGRQQLLQRGFLPPNVLTEASGNGPSVYSSAHTPGPPPKPRRSKKVELEGPTQLCPGPPKLIH
SAAQKTSRPMVAAFDYNPRENSPNMDVEAELPFRAGDVITVFGNMDDDGFYYGELNGQRGLVPSNFLEGP
GPESGSLESGTSQAESQRTRRRRVQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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