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Report for CCDS48894.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48894.1 Public Mus musculus 11 Nfe2l1 23 108 98 CCDS HistoryNCBI Gene:18023Re-query CCDS DB by CCDS ID:48894.1Re-query CCDS DB by GeneID:18023See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48894.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167110.7 ENSMUSP00000127804.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167110.7Link to Ensembl Protein Viewer:ENSMUSP00000127804.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167110Re-query CCDS DB by Protein ID:ENSMUSP00000127804
Original member Current member NCBI NM_001130453.1 NP_001123925.1 Accepted alive Link to Nucleotide Sequence:NM_001130453.1Link to Protein Sequence:NP_001123925.1Re-query CCDS DB by Nucleotide ID:NM_001130453Re-query CCDS DB by Protein ID:NP_001123925Link to BLAST:NP_001123925.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123925.1 583 Q61985-3 583 100% 0 0

Chromosomal Locations for CCDS 48894.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 96819176 96820516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96821251 96821409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96822104 96822319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96823945 96823980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1752 nt):
ATGGGGTGGGAGTCCCGACTCACTGCAGCTTCTGCGGATATAGATCTGATTGACATCCTTTGGCGACAGG
ATATTGATCTGGGGGCTGGGCGTGAGGTTTTTGACTACAGTCATCGCCAGAAGGAGCAGGATGTGGATAA
GGAACTGCAAGATGGACGAGAACGAGAGGACACCTGGTCAGGCGAGGGTGCGGAAGCTCTGGCCCGAGAC
CTGCTAGTAGATGGAGAGACTGGGGAGAGCTTCCCTGCACAGTTCCCAGCTGACGTTTCCAGCATCCCAG
AAGCAGTGCCTAGTGAGAGTGAGTCCCCCGCCCTTCAGAACAGCCTTCTATCTCCTCTTCTGACGGGGAC
AGAATCACCATTTGATTTGGAACAGCAGTGGCAAGATCTCATGTCCATCATGGAAATGCAGGCTATGGAA
GTAAATACATCAGCAAGTGAGATTCTGTACAATGCCCCTCCTGGAGACCCTCTTAGCACCAACTACAGCC
TTGCACCCAACACTCCCATCAATCAGAATGTCAGCCTGCATCAGGCGTCCCTGGGGGGCTGCAGTCAGGA
CTTCTCCCTCTTCAGCCCCGAGGTGGAGAGCCTGCCTGTGGCTAGCAGCTCCACACTGCTTCCACTCGTC
CCCAGCAACTCCACCAGTCTCAACTCCACCTTTGGCTCTACCAACCTAGCAGGGCTTTTCTTTCCATCCC
AGCTCAATGGCACAGCCAATGACACATCAGGCCCTGAGCTACCTGACCCCCTTGGGGGCCTGTTAGACGA
AGCTATGCTGGATGAGATCAGCCTGATGGACCTGGCCATTGAGGAGGGCTTCAACCCGGTGCAGGCTTCC
CAGCTCGAAGAGGAGTTTGACTCTGACTCAGGCCTCTCCTTGGACTCCAGCCATAGCCCTTCCTCTCTGA
GCAGCTCTGAAGGGAGCTCTTCTTCTTCCTCCTCCTCCTCTTCCTCTTCTGCTTCCTCCTCTGCCTCTTC
TTCCTTCTCTGAGGAGGGTGCTGTTGGTTACAGCTCTGACTCTGAGACCCTAGACCTAGAAGAGGCTGAG
GGTGCAGTGGGCTACCAGCCGGAATACTCCAAGTTCTGCCGCATGAGCTATCAGGATCCTTCTCAGCTCT
CTTGCCTTCCCTACTTAGAGCATGTGGGCCACAATCATACATACAATATGGCACCCAGTGCCCTTGACTC
TGCTGATCTACCACCACCCAGCACCCTCAAGAAAGGTAGCAAGGAAAAGCAGGCTGACTTCCTGGACAAG
CAGATGAGCCGAGATGAGCACAGAGCCCGAGCCATGAAGATCCCATTCACCAATGACAAGATCATCAACC
TGCCTGTAGAAGAATTCAATGAGCTGCTGTCCAAATACCAGCTGAGCGAGGCCCAGCTCAGCCTCATCCG
GGATATCCGGCGCCGGGGCAAAAACAAGATGGCTGCACAGAACTGCCGCAAGCGCAAGTTGGACACCATC
CTAAACCTAGAACGTGATGTGGAGGACTTGCAGCGAGATAAGGCCCGATTGCTTCGAGAAAAGGTAGAGT
TCCTTCGGTCTCTGCGACAGATGAAGCAGAAGGTCCAAAGCTTATACCAGGAGGTGTTTGGGCGGCTGCG
GGATGAGCATGGGAGGCCCTACTCACCCAGTCAGTATGCCCTTCAGTATGCTGGGGATGGCAGTGTCCTC
CTCATTCCTCGCACGATGGCTGACCAGCAGGCTCGGCGACAGGAGAGAAAGCCAAAGGACCGGAGGAAGT
GA

Translation (583 aa):
MGWESRLTAASADIDLIDILWRQDIDLGAGREVFDYSHRQKEQDVDKELQDGREREDTWSGEGAEALARD
LLVDGETGESFPAQFPADVSSIPEAVPSESESPALQNSLLSPLLTGTESPFDLEQQWQDLMSIMEMQAME
VNTSASEILYNAPPGDPLSTNYSLAPNTPINQNVSLHQASLGGCSQDFSLFSPEVESLPVASSSTLLPLV
PSNSTSLNSTFGSTNLAGLFFPSQLNGTANDTSGPELPDPLGGLLDEAMLDEISLMDLAIEEGFNPVQAS
QLEEEFDSDSGLSLDSSHSPSSLSSSEGSSSSSSSSSSSSASSSASSSFSEEGAVGYSSDSETLDLEEAE
GAVGYQPEYSKFCRMSYQDPSQLSCLPYLEHVGHNHTYNMAPSALDSADLPPPSTLKKGSKEKQADFLDK
QMSRDEHRARAMKIPFTNDKIINLPVEEFNELLSKYQLSEAQLSLIRDIRRRGKNKMAAQNCRKRKLDTI
LNLERDVEDLQRDKARLLREKVEFLRSLRQMKQKVQSLYQEVFGRLRDEHGRPYSPSQYALQYAGDGSVL
LIPRTMADQQARRQERKPKDRRK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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