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Report for CCDS48931.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48931.1 Public Mus musculus 11 Nt5c3b 23 108 98 CCDS HistoryNCBI Gene:68106Re-query CCDS DB by CCDS ID:48931.1Re-query CCDS DB by GeneID:68106See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48931.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092688.11 ENSMUSP00000090360.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092688.11Link to Ensembl Protein Viewer:ENSMUSP00000090360.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000092688Re-query CCDS DB by Protein ID:ENSMUSP00000090360
Original member Current member NCBI NM_001102650.2 NP_001096120.1 Accepted alive Link to Nucleotide Sequence:NM_001102650.2Link to Protein Sequence:NP_001096120.1Re-query CCDS DB by Nucleotide ID:NM_001102650Re-query CCDS DB by Protein ID:NP_001096120Link to BLAST:NP_001096120.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001096120.1 300 Q3UFY7-1 300 100% 0 0

Chromosomal Locations for CCDS 48931.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100429815 100429949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100431077 100431277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100432918 100433080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100434695 100434784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100436155 100436240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100440040 100440086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100440185 100440254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100440829 100440927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100441044 100441055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGGCGGAGGAGGTAAGCAGCCTGATGAAGGCCACGGTCCTGATGCGGCAGCCCGGACGGGTGCAGGAAA
TTGTGGGCGCCCTTCGCAGGGGCGGAGGAGACCGCCTGCAGGTGATTTCCGATTTTGACATGACCCTGAG
CAGATTTGCTTACAATGGACAGCGATGCCCTTCTTCCCACAATATTCTGGATAACAGCAAAATTATCAGT
GAGGATTGTCGCAAAGAGCTCACCGAGCTCTTTCACCACTATTATCCCATTGAGATCGACCCACACCGGA
CCATCAAAGAGAAGCTGCCTCACATGGTGCAGTGGTGGAGCAAAGCCCACAGTCTCCTGTGCCAGCAGAG
GATCCAGAAAGTCCAGATCGCTCAGGTGGTTGGAGAGTCCACTGCGATGCTCAGGGAGGGCTATAAGACG
TTCTTCGACACACTCTACCAGAACAACATCCCCCTTTTCATCTTCTCAGCGGGCATTGGTGACATCCTGG
AAGAAATTATCCGACAGATGAAAGTGTTCCACCCCAACATCCACATTGTGTCCAACTACATGGACTTCAG
TGAGGATGGATTCCTGAAAGGATTCAAGGGGCAGCTCATTCACACCTACAACAAGAACAGCTCCGTGTGT
GAGAACTCCAGCTACTTCCAGCAACTTCAGAACAAGACCAACATCATCCTGCTGGGAGACTCCATCGGGG
ACCTCACCATGGCTGATGGGGTCCCCGGGGTGCAGAACATTCTCAAGATCGGCTTCCTGAATGACAAGGT
GGAGGAGCGGCGGGAGCGTTACATGGACTCCTACGACATTGTGTTGGAGAAGGACGAGACGCTGGACGTG
GTTAATGGGTTGCTGCGGCACATCCTTTACCAGGGGGACTGCGTGGAGCTCCAGGGCTCTTAA

Translation (300 aa):
MAEEVSSLMKATVLMRQPGRVQEIVGALRRGGGDRLQVISDFDMTLSRFAYNGQRCPSSHNILDNSKIIS
EDCRKELTELFHHYYPIEIDPHRTIKEKLPHMVQWWSKAHSLLCQQRIQKVQIAQVVGESTAMLREGYKT
FFDTLYQNNIPLFIFSAGIGDILEEIIRQMKVFHPNIHIVSNYMDFSEDGFLKGFKGQLIHTYNKNSSVC
ENSSYFQQLQNKTNIILLGDSIGDLTMADGVPGVQNILKIGFLNDKVEERRERYMDSYDIVLEKDETLDV
VNGLLRHILYQGDCVELQGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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