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Report for CCDS48955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48955.1 Public Mus musculus 11 Marchf10 23 108 98 CCDS HistoryNCBI Gene:632687Re-query CCDS DB by CCDS ID:48955.1Re-query CCDS DB by GeneID:632687See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48955.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049995.9 ENSMUSP00000063198.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049995.9Link to Ensembl Protein Viewer:ENSMUSP00000063198.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000049995Re-query CCDS DB by Protein ID:ENSMUSP00000063198
Original member Current member EBI ENSMUST00000138977.7 ENSMUSP00000121919.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000138977.7Link to Ensembl Protein Viewer:ENSMUSP00000121919.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000138977Re-query CCDS DB by Protein ID:ENSMUSP00000121919
Original member NCBI NM_172568.2 NP_766156.2 Updated not alive Link to Nucleotide Sequence:NM_172568.2Link to Protein Sequence:NP_766156.2Re-query CCDS DB by Nucleotide ID:NM_172568Re-query CCDS DB by Protein ID:NP_766156
Current member NCBI NM_172568.3 NP_766156.2 Accepted alive Link to Nucleotide Sequence:NM_172568.3Link to Protein Sequence:NP_766156.2Re-query CCDS DB by Nucleotide ID:NM_172568Re-query CCDS DB by Protein ID:NP_766156Link to BLAST:NP_766156.2

Chromosomal Locations for CCDS 48955.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 105361144 105361199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105364516 105364558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105371862 105371975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105382158 105382267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105385417 105385586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105389584 105390931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105396949 105397095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105408643 105408814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105438819 105438935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 105451076 105451165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2367 nt):
ATGTTGCATGAAACAAGGGACAGGCAGAAGTTCGTCAGCGATGTTCAGTATCTACGGGATATGCAGCATA
AGGTGGACTCAGAATATCAGGCTTGTTTGAAACGACAGGAAAACAAGAAAGAACCAAATGAGAAGAAGCA
GGAGCAGCTGTGGGTGAGAGATACAAGTGACAGGTCGCGGTTTTCAAGCGGGTCGTCATGCAAACAGAGT
TCCTGTGAGGAGGATTCTCGCAGTGAAGCAAGATTATCTACCAAAACATCTTCGGCTAAGTGTGAGCCCA
GACTTCCAGCCATTGACCAAGCATCTGTCAAGCAGAAACACAAAGGCACCATGACACTAAAGAAGTCAGA
GAAAGTGAGCCCCAGCAAACCCTCTCCAGTGGCACCAAAGATTTTATCAAGGAAGAGGAGACCAAACCTG
GGGAGATTGACAGTCAGCCCAGAGATGCACAGCCCAAGAGCATCTGCGGAGAGAAGCAGGCAGAAACCAC
AGCTGTCGACAAAGGCATCAGGACTCCTGGGAGCAGACCCAGTTGTCCAACAAGAAAGCCTGCTGTGTGC
AAATGAGACTAAGCTAAAGAAGCCAGCTCGAGAGAGAAGAAAGTTAGCCCCATCTTCACAACTCATGAGA
ACGGCTGGGAAGCCCCGCGAGAAACAGAAAAAAGGAGACCTGAGTGCTCATCCCCAGAACGAGCCCCACA
CTGCCCTCTCACAGACATTCCAGCCAATGAATGGTTCTCAAATGCTGAATGAGTCCTTGGGACCTTCACT
CCTCCCCGCCACCGTGGTAGGACCAAGAAGGACACCATTTAGGTTCCATGACGAAGATTTTTATTCTGCA
ATATCACTAAACAATGAACAAGAGAGCTATGACACGGAAGAGGAGACTCACATGGAGGAAGAGCTCCTGC
TGTCTGGGATGCGCTCTCCTCCCAGCTATAAAAGGAGCCGGTTTCTCGGGACATCAACTGCTCAAAATAG
AAATGTGGAGGAAAATGCTGAAAATCTCAGAGGAAATTCTCTAAGATGGAGTGAGCCCAGCCCTGGATCT
CCAAGAAAAACCAGTACCACAGAGCCAGCAACAAAGCAGCCTTCTCCTGGGCAAAGGATGCTCCAAGATA
CCAGGTTACCCAGTGAGTTGGCTAAAGAGAACCCCAGTGGAGACCAAGATGAGAAGACCCCTGTTCTAGG
GGATGCGAAATCTGATGGTGTTATCCAGGTCAGTGCTGACGATGTGTCCAGCGGTGGTACTGTGGAAGAC
AGGTCTGCTGTTCAAAATCACGAGAGAGACTGGCAACATTACTATAGTGGTTCTAGGACCTCATTTGACT
GCTTACTTTCTGGGAGGCCCACAGCTCCAAGATCATCCATGAATCCACCTTACAGTGCTCATGGGTCACT
GCTCCATTCTGCTCTGATAGACGACATCCCGGCAAACTTGTCCATGTCATCTATCCTAGTCCCAAGTTCA
GACTTGGAGGAAAACCTAAGGTTTAATGTACGCCGGCCACTCTCACCCATCAGAAATAGAAATCCATTGG
CCGCTGCTGAAGGCCGCAGTGATGAAGCCCAGGGTACACAGGAGATGGCTTCAACGAGTCACATTCAGGA
GCCTCCATTACTGGCAGATCTACCAAATCCACAAAGCAGTGTGGCCTTAGGGGACTCTCCCAGCTCTCCT
ACAAGACGACATTTACAAGGCCATTTCTACATGCCTGGGTCCCTGCAGGAAAATATACCTTTTACTTTCT
TTGCAGTATCTGATTTTGCAAATCAAAATGATAACGGAACCACCGTTAGAGTCTCTGGTGTCATGGATGA
AAAGGCCACAGAAATAAAGGCAGATCCTGAGAAGCTCAGGAAATTGCAAGAAAGTCTCCTGGAGGAGGAC
TCGGAAGAGGAGGAGGGAGACTTGTGTCGAATCTGTCAGATAGCCGGGGGTTCCCCAGCCAACCCCCTCC
TGGAGCCTTGCGGCTGTGTGGGAAGTCTACAGTTTGTTCACCAAGAGTGCCTGAAAAAGTGGCTGAAAGT
GAAAATAACATCAGGAGCAGATCTAGGCACTGTAAAGACCTGTGAGATGTGTAAGCAAGGCCTACTGGTC
GACCTGGATGACTTCAACATGACCGAATTCTACCACAAGCACCAGCAATCCCGGGCACAGAGTGAGCTGA
TGAACTCAGGCTTGTACCTGGTGCTGCTGCTGCACCTATATGAGCAGAGGTTCGCGGAGCTCATGGCACT
CAACTACAGGCGGGCTTCCAGAGAGAGGTTGTCAAGAAATTACCCACAACCCAGACCGGAAGAAAATGAA
AGTTCCGAGTCGGGAGATGGTAATGCAAGCAACATTTACCCAGGCCGGGTCATCTAG

Translation (788 aa):
MLHETRDRQKFVSDVQYLRDMQHKVDSEYQACLKRQENKKEPNEKKQEQLWVRDTSDRSRFSSGSSCKQS
SCEEDSRSEARLSTKTSSAKCEPRLPAIDQASVKQKHKGTMTLKKSEKVSPSKPSPVAPKILSRKRRPNL
GRLTVSPEMHSPRASAERSRQKPQLSTKASGLLGADPVVQQESLLCANETKLKKPARERRKLAPSSQLMR
TAGKPREKQKKGDLSAHPQNEPHTALSQTFQPMNGSQMLNESLGPSLLPATVVGPRRTPFRFHDEDFYSA
ISLNNEQESYDTEEETHMEEELLLSGMRSPPSYKRSRFLGTSTAQNRNVEENAENLRGNSLRWSEPSPGS
PRKTSTTEPATKQPSPGQRMLQDTRLPSELAKENPSGDQDEKTPVLGDAKSDGVIQVSADDVSSGGTVED
RSAVQNHERDWQHYYSGSRTSFDCLLSGRPTAPRSSMNPPYSAHGSLLHSALIDDIPANLSMSSILVPSS
DLEENLRFNVRRPLSPIRNRNPLAAAEGRSDEAQGTQEMASTSHIQEPPLLADLPNPQSSVALGDSPSSP
TRRHLQGHFYMPGSLQENIPFTFFAVSDFANQNDNGTTVRVSGVMDEKATEIKADPEKLRKLQESLLEED
SEEEEGDLCRICQIAGGSPANPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGTVKTCEMCKQGLLV
DLDDFNMTEFYHKHQQSRAQSELMNSGLYLVLLLHLYEQRFAELMALNYRRASRERLSRNYPQPRPEENE
SSESGDGNASNIYPGRVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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