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Report for CCDS48977.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48977.1 Public Mus musculus 11 Cpsf4l 23 108 98 CCDS HistoryNCBI Gene:52670Re-query CCDS DB by CCDS ID:48977.1Re-query CCDS DB by GeneID:52670See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48977.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100248.5 ENSMUSP00000097819.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100248.5Link to Ensembl Protein Viewer:ENSMUSP00000097819.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000100248Re-query CCDS DB by Protein ID:ENSMUSP00000097819
Original member Current member NCBI NM_001164532.1 NP_001158004.1 Accepted alive Link to Nucleotide Sequence:NM_001164532.1Link to Protein Sequence:NP_001158004.1Re-query CCDS DB by Nucleotide ID:NM_001164532Re-query CCDS DB by Protein ID:NP_001158004Link to BLAST:NP_001158004.1

Chromosomal Locations for CCDS 48977.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 113699836 113699982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113702056 113702095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113702413 113702506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113703271 113703366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113706417 113706569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113708804 113708854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 113709228 113709489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (843 nt):
ATGGAGGAGGTCATTGCCGGGCTGCAAGGGTTCACGTTCGCCTTTGAGCTGGATGTGGAATCGCAGAAGG
GCACTGGGCTACTGCCTTTCCAGGGCATGGACAGTGAGTGGCGATGCCTGTGTCCCCTGCTCAGGTCCTG
GAGGTGCTGTGCGTCTCTCCCACACAGCTTCTGGGTATTCACTGCCCGGGATAGAAAGGCAGACTTCCGA
GCTGCCAGAGCTCCCTGGGTGCCCCCGAAACCTTCCACCTCCTGCCTCAGAGAGTCCAGTTCAGCTGTGT
GCAACTTCTTCGCTAAAGGGCTCTGTGTGAAAGGGATGCTATGCCCACTCCGGCACGAGCAGGGTGAGAA
GCTGGTGGTGTGCAAACACTGGCTTCGAGGCCTCTGCCGGAAGAGTGATTGCTGCGACTTCCTGCACCAG
TATGACGTCAGCAAGATGCCCGTGTGCTATTTCCACTCCAAGTTCGGGAACTGCAGCAACAAGGAATGCC
TGTTCCTGCACTTGAAGCCAGTTCTCAAGCTCCAGGACTGCCCGTGGTATAACCAAGGGTTCTGCAAGGA
AGGTCCCCTGTGTAAATACCGCCATGTTCATCAAGTACTGTGTCCCAACTACTTCACCGGCTTCTGCCCC
GAGGGACCTCAGTGCCAATTTGGGCACCCTAAGATGAGTCCTCCGTTCCATCCCAGTAATGTGAAGCTGC
AGCCTGTCAACCAGCCATGGGATTCAACAACTTCTACTGGCAACACTCTGGTGTCCCCTTTCCAGGCAAA
GCCCATGGTCCACGGTCAGAGGAGGTGGAGTCTGCCTCAGGCCTGCAGCTCAAGGGCACACCCTGCACCT
TAG

Translation (280 aa):
MEEVIAGLQGFTFAFELDVESQKGTGLLPFQGMDSEWRCLCPLLRSWRCCASLPHSFWVFTARDRKADFR
AARAPWVPPKPSTSCLRESSSAVCNFFAKGLCVKGMLCPLRHEQGEKLVVCKHWLRGLCRKSDCCDFLHQ
YDVSKMPVCYFHSKFGNCSNKECLFLHLKPVLKLQDCPWYNQGFCKEGPLCKYRHVHQVLCPNYFTGFCP
EGPQCQFGHPKMSPPFHPSNVKLQPVNQPWDSTTSTGNTLVSPFQAKPMVHGQRRWSLPQACSSRAHPAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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