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Report for CCDS49016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49016.1 Public Mus musculus 12 Efr3b 23 108 98 CCDS HistoryNCBI Gene:668212Re-query CCDS DB by CCDS ID:49016.1Re-query CCDS DB by GeneID:668212See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49016.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111178.1 ENSMUSP00000106809.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111178.1Link to Ensembl Protein Viewer:ENSMUSP00000106809.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111178Re-query CCDS DB by Protein ID:ENSMUSP00000106809
Original member NCBI NM_001082483.1 NP_001075952.1 Updated not alive Link to Nucleotide Sequence:NM_001082483.1Link to Protein Sequence:NP_001075952.1Re-query CCDS DB by Nucleotide ID:NM_001082483Re-query CCDS DB by Protein ID:NP_001075952
Current member NCBI NM_001082483.2 NP_001075952.1 Accepted alive Link to Nucleotide Sequence:NM_001082483.2Link to Protein Sequence:NP_001075952.1Re-query CCDS DB by Nucleotide ID:NM_001082483Re-query CCDS DB by Protein ID:NP_001075952Link to BLAST:NP_001075952.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001075952.1 817 Q6ZQ18-1 817 100% 0 0

Chromosomal Locations for CCDS 49016.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 3966442 3966547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3967103 3967152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3968527 3968633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3969565 3969613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3970976 3971067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3971766 3971893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3973608 3973675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3975336 3975467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3976715 3976876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3977119 3977194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3977913 3978085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3980142 3980193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3980451 3980562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3981654 3981815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3981970 3982105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3982855 3982933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3983384 3983518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3984534 3984683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3985430 3985551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3992906 3993056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3999590 3999717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4000880 4000956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4038704 4038710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2454 nt):
ATGTACGGTGTGTGTGGCTGCTGCGGTGCCCTTCGTCCCAGGTACAAGAGGCTGGTGGACAATATCTTCC
CTGAAGATCCTGAGGATGGTCTGGTGAAGACCAACATGGAGAAACTGACCTTCTATGCCCTCTCAGCGCC
TGAAAAACTGGATCGAATTGGTGCCTACCTCTCAGAGAGGCTCATCCGAGATGTGGGTCGCCATCGATAT
GGGTACGTGTGTATTGCCATGGAGGCGCTGGACCAGCTGCTCATGGCCTGCCACTGCCAGAGTATCAACC
TCTTCGTGGAAAGCTTCCTCAAAATGGTGGCCAAGCTGCTGGAGTCGGAGAAGCCGAACCTGCAGATCCT
TGGCACCAACTCGTTTGTGAAGTTCGCCAACATTGAAGAGGACACCCCCTCCTATCATCGAAGCTATGAC
TTCTTTGTGTCCCGATTCAGTGAAATGTGCCACTCAAGCCACGATGACCTGGAAATCAAGACTAAGATCC
GCATGTCAGGCATCAAAGGCCTGCAAGGGGTAGTGAGGAAGACAGTGAATGACGAGCTGCAGGCCAACAT
CTGGGACCCACAGCACATGGACAAGATCGTCCCGTCGCTGCTTTTCAATCTGCAGCACGTGGAAGAGGCA
GAGAGCCGGTCTCCCTCGCCCCTCCAAGCACCAGAGAAGGAAAAGGAGAACCCAGCAGAACTGGCTGAGA
GGTGCCTGAGGGAGCTCCTGGGCCGGGCGGCCTTCGGCAATATCAAGAACGCCATCAAGCCCGTTCTTAT
CCACCTGGATAACCACTCTCTTTGGGAACCCAAAGTGTTTGCCACCCGTTGCTTTAAAATCATCATGTAC
TCAATTCAGCCGCAGCACTCCCACCTGGTTATCCAGCAGCTCCTGAGCCACCTGGACGCCAACAGCCGCA
GCGCGGCGACTGTGCGCGCCGGCATCGTGGAAGTCCTATCGGAAGCTGCAATTATCGCTGCCACGGGCTC
TGTCGGGCCCACGGTACTGGAGATGTTCAACACCCTGCTGCGGCAGCTGCGGCTCAGCATCGACTACGCG
CTAACTGGGAGCTACGACGGCGCTGTGAGCCTGGGCTCCAAGATCATCAAGGAGCATGAGGAGTGCATGT
TCCAGGAGGCCGTCATCAAAACTATCGGCTCCTTTGCCAGCACACTGCCGACCTACCAGCGCTCAGAGGT
GATCCTCTTCATCATGAGCAAAGTCCCGCTGCCTTCTGTGCATCACCCCGTAGAGACCGGACGGACGGGG
GAGAATAGGAACCGGCTGACCCAGATCATGTTGCTGAAGTCCCTCCTTCAGGTATCCACAGGTTTCCAGT
GCAACAACATGATGTCGGCCCTGCCCAGCAACTTCCTGGACCGCCTTCTCTCCACTGCCCTCATGGAGGA
CGCAGAAATCCGCCTCTTCGTCCTAGAGATCCTCATCAGTTTCATTGATCGCCATGGCAACCGCCACAAA
TTCTCTACCATCAGCACCCTTGGTGACATCTCGGTCCTGAAGTTGAAAGTGGACAAGTGCTCCCGGCAGG
ACACTGTCTTCATGAAGAAGCACTCCCAGCAGCTATACAGGCACATCTACCTGAGCTGTAAGGAGGAGAC
GAACATCCAGAAACACTATGAGGCACTCTATGGCCTGCTGGCCCTCATAAGCATTGAGCTGGCCAACGAG
GAGGTGGTGGTGGACCTCATCCGACTGGTGCTGGCTGTTCAGGATGTGGCTCAGGTCAACGAAGAGAATC
TGCCTACCTATAACCGCTGTGCGCTCTATGCTCTGGGCGCAGCCTACCTGAACCTCATCAGCCAGCTCAC
AACAGTGCCTGCTTTCTGCCAGCACATCCACGAGGTGATAGAGACCAGAAAGAAAGAGGCACCATACATG
CTTCCTGAGGACGTGTTTGTGGAAAAGCCCAGGTTGTCTCAGAATCTAGATGGTGTGGTGATCGAGTTTC
TCTTCCGCCAGAGCAAAATCAGTGAGGTCCTGGGAGGCAGCGGCTACAATTCAGACAGGCTCTGCCTGCC
GTACATCCCTCAGCTGACAGATGAAGATCGCTTGTCCAAGAGGAAGAGCATTGGAGAGACCATTTCCCTT
CAGGTAGAGGTGGAATCCAGGAACAGCCCAGAAAAAGAGGAGCGAGTTCCTGCAGAAGAGATCACCTATG
AGACACTGAAGAAGGCCATTGTGGACAGTGTGGCGGTTGAGGAGCAGGAGCGTGAGCGGCAGAGACAGGT
GGTAGAGAAGTTCCAGAAAGCGCCCTTTGAGGAAATTGCAGCTCACTGTGGGGCCCGGGCATCACTGCTG
CAGAGTAAACTCAACCAGATCTTTGAAATCACCATCCGGCCCCCTCCAAGCCCTTCAGGAACCATCAGCG
CAGCCTACGGCCAGCCGCAAAACCACTCCATCCCTGTCTATGAGATGAAGTTTCCTGATCTGTGTGTATA
CTGA

Translation (817 aa):
MYGVCGCCGALRPRYKRLVDNIFPEDPEDGLVKTNMEKLTFYALSAPEKLDRIGAYLSERLIRDVGRHRY
GYVCIAMEALDQLLMACHCQSINLFVESFLKMVAKLLESEKPNLQILGTNSFVKFANIEEDTPSYHRSYD
FFVSRFSEMCHSSHDDLEIKTKIRMSGIKGLQGVVRKTVNDELQANIWDPQHMDKIVPSLLFNLQHVEEA
ESRSPSPLQAPEKEKENPAELAERCLRELLGRAAFGNIKNAIKPVLIHLDNHSLWEPKVFATRCFKIIMY
SIQPQHSHLVIQQLLSHLDANSRSAATVRAGIVEVLSEAAIIAATGSVGPTVLEMFNTLLRQLRLSIDYA
LTGSYDGAVSLGSKIIKEHEECMFQEAVIKTIGSFASTLPTYQRSEVILFIMSKVPLPSVHHPVETGRTG
ENRNRLTQIMLLKSLLQVSTGFQCNNMMSALPSNFLDRLLSTALMEDAEIRLFVLEILISFIDRHGNRHK
FSTISTLGDISVLKLKVDKCSRQDTVFMKKHSQQLYRHIYLSCKEETNIQKHYEALYGLLALISIELANE
EVVVDLIRLVLAVQDVAQVNEENLPTYNRCALYALGAAYLNLISQLTTVPAFCQHIHEVIETRKKEAPYM
LPEDVFVEKPRLSQNLDGVVIEFLFRQSKISEVLGGSGYNSDRLCLPYIPQLTDEDRLSKRKSIGETISL
QVEVESRNSPEKEERVPAEEITYETLKKAIVDSVAVEEQERERQRQVVEKFQKAPFEEIAAHCGARASLL
QSKLNQIFEITIRPPPSPSGTISAAYGQPQNHSIPVYEMKFPDLCVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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