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Report for CCDS49023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49023.1 Public Mus musculus 12 Ldah 23 108 98 CCDS HistoryNCBI Gene:68832Re-query CCDS DB by CCDS ID:49023.1Re-query CCDS DB by GeneID:68832See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49023.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169104.2 ENSMUSP00000129424.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169104.2Link to Ensembl Protein Viewer:ENSMUSP00000129424.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169104Re-query CCDS DB by Protein ID:ENSMUSP00000129424
Original member Current member NCBI NM_001167767.2 NP_001161239.1 Accepted alive Link to Nucleotide Sequence:NM_001167767.2Link to Protein Sequence:NP_001161239.1Re-query CCDS DB by Nucleotide ID:NM_001167767Re-query CCDS DB by Protein ID:NP_001161239Link to BLAST:NP_001161239.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161239.1 236 Q8BVA5-2 236 99.5763% 0 1

Chromosomal Locations for CCDS 49023.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 8220602 8220755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8227220 8227363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8238443 8238615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8268364 8268598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8283900 8283904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGGCCTCAGAAGTCGAGGAACAAATCCCTGTGCGTGAGGAGTTCTTTCTCTGTGGTGGAGTTGAAACCA
AGATCATAAAATGTGGGCCCTGGACTAACCTCTTTGAGAAACAAGACGTCAGCAAGCCAAAACAGCTTAT
CTTCATCATTCCCGGTAACCCAGGCTATTCCGCATTCTACGTGCCATTTGCAAAGGCCTTGTACACTTTG
ATGAAGAGCCGCTTCCCGGTATGGATAATCTCTCATGCTGGGTTTTCGGTGACTCCCAAAGACAAGAAGG
TTCTTGCAGCACCACAGGAAGAGTCAAATGCTCAAAAAATTGAGGACGTCTATGGTCTGAATGGTCAAAT
AGAGCACAAAATAGCTTTTCTGAGAGCTCACGTGCCAAAGGATGTGAAGCTTATACTCATTGGCCATTCC
GTAGGCACCTATATGACCCTTCACGTGATGAAGCGAGTCCCCGAGCTGCCTGTCGCCCACGCCTTTCTGC
TCTTCCCAACTATCGAACGAATGTCTGAATCGCCCAACGGCAAGTTTGCCACTCCATTTTTGTGCCAGTT
TCGATACCTGCTCTATGCTACCAGCTACTTACTTTTTAAGCCGTGTCCTGAAGTCATAAAATCTTTCATA
ATCCAAAAGCTCATGGGACAAATGAACATTAAGCTTGAACTTCCTTTGACGGATATCCTTCAACCATTTT
GCCTTGCTTAA

Translation (236 aa):
MASEVEEQIPVREEFFLCGGVETKIIKCGPWTNLFEKQDVSKPKQLIFIIPGNPGYSAFYVPFAKALYTL
MKSRFPVWIISHAGFSVTPKDKKVLAAPQEESNAQKIEDVYGLNGQIEHKIAFLRAHVPKDVKLILIGHS
VGTYMTLHVMKRVPELPVAHAFLLFPTIERMSESPNGKFATPFLCQFRYLLYATSYLLFKPCPEVIKSFI
IQKLMGQMNIKLELPLTDILQPFCLA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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