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Report for CCDS49024.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49024.1 Public Mus musculus 12 Hs1bp3 23 108 98 CCDS HistoryNCBI Gene:58240Re-query CCDS DB by CCDS ID:49024.1Re-query CCDS DB by GeneID:58240See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49024.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020927.9 ENSMUSP00000020927.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020927.9Link to Ensembl Protein Viewer:ENSMUSP00000020927.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000020927Re-query CCDS DB by Protein ID:ENSMUSP00000020927
Original member Current member NCBI NM_021429.3 NP_067404.2 Accepted alive Link to Nucleotide Sequence:NM_021429.3Link to Protein Sequence:NP_067404.2Re-query CCDS DB by Nucleotide ID:NM_021429Re-query CCDS DB by Protein ID:NP_067404Link to BLAST:NP_067404.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067404.2 395 Q3TC93 395 100% 0 0

Chromosomal Locations for CCDS 49024.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 8313466 8313497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8317785 8317950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8321519 8321726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8323870 8324101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8336238 8336395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8337633 8337768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 8341832 8342087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGCAGTCCCCGGCGGTGCTCCGCACCTCCAGACAAGTTCAGAATGCACACACAGGCCTCGACCTGTCTG
TCCCACAGCACCAGGAGGTGCGGGGTAAGATGATGTCCGGCCATGTGGAGTACCAGATCCTAGTGGTGAC
CCGGTTGGCTGTGTTCAAGTCAGCCAAGCACCGGCCCGAAGATGTCGTCCAGTTCTTGGTCTCTAAAAAA
TACAGCGAGATCGAGGAGTTTTACCAGAAGCTGTACAGTTGTTACCCAGCAGCCAGCCTGCCCCCGCTGC
CTAGGAAGGTCCTGTTTGTCGGGGAGTCTGACATCCGGGAGAGGCGAGCCATGTTTGATGAGATCCTACG
CTGTGTCTCCAAGGATGCCCAGTTGGCAGGCAGCCCAGAGCTGCTAGAATTCTTAGGCACCAGAGCCCCA
GGGGCTACGGGCCTTGCCACCCGAGATCCCTCTGTCTTGGATGACACAGCCAGCCAGCCAGGGGACAGTG
ATGAGGCTTTTGACTTCTTTGAGCAGCAGGATGAAGTGCAGCCACCCACACTGGGCCTGAGCAGCAAGGA
TGTGGAGAAGTCCTTGGTGGGAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGCTGGATCCCCTGGGT
ATCATGCGCTCCAAGAAGCCCAAGAAACGCCCAGAAGTGGCCGTGAGGCCCAAGCCTGCACCTCGGCTCA
CCATCTTTGATGAGGAGGTAGACCCTGACGCGGGGCTCTTCAGCTCAGACAAGAAGGTGTCTGAGACCCG
GAGACCCCTGGAGACCACACAGGACTCCCTGAAGCTGTTTGATGACCCTGACCTTGGCGGGGCTGTCTCC
CTGGGTGACCCTCTACTGCTGCCTGCTGCCAGTGAGAGCAGAGGGCCCACATCCCGCCCAGAACACGGGG
ATGCCTCCAAGGAGCTGTTCAGAGTTGAAGAGGACCTGGACCTGATTCTGAACCTGGGATCTGAACCAAA
GCCCAAGCCCCAGACTAAGCCCAAGCCTCTAGTCCCAGCTAAGCCAGCATTGCCCAGGAAACCAACTCTG
CCCGCATCAGTGGGCCCGTCAGAACCTGGGTCTGGACCGCAGAAGCAGCAACAGATCCAAGCTATGGATG
AAATGGACATCTTGCAGTATATCCGGGACCATGACACACTTGCCCAAGACTCCCCCAGCCTCTTCTGA

Translation (395 aa):
MQSPAVLRTSRQVQNAHTGLDLSVPQHQEVRGKMMSGHVEYQILVVTRLAVFKSAKHRPEDVVQFLVSKK
YSEIEEFYQKLYSCYPAASLPPLPRKVLFVGESDIRERRAMFDEILRCVSKDAQLAGSPELLEFLGTRAP
GATGLATRDPSVLDDTASQPGDSDEAFDFFEQQDEVQPPTLGLSSKDVEKSLVGEEEEEEEEEEVLDPLG
IMRSKKPKKRPEVAVRPKPAPRLTIFDEEVDPDAGLFSSDKKVSETRRPLETTQDSLKLFDDPDLGGAVS
LGDPLLLPAASESRGPTSRPEHGDASKELFRVEEDLDLILNLGSEPKPKPQTKPKPLVPAKPALPRKPTL
PASVGPSEPGSGPQKQQQIQAMDEMDILQYIRDHDTLAQDSPSLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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