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Report for CCDS49040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49040.1 Public Mus musculus 12 Trappc12 23 108 98 CCDS HistoryNCBI Gene:217449Re-query CCDS DB by CCDS ID:49040.1Re-query CCDS DB by GeneID:217449See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49040.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170994.2 ENSMUSP00000132009.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170994.2Link to Ensembl Protein Viewer:ENSMUSP00000132009.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170994Re-query CCDS DB by Protein ID:ENSMUSP00000132009
Original member NCBI NM_001161411.1 NP_001154883.1 Updated not alive Link to Nucleotide Sequence:NM_001161411.1Link to Protein Sequence:NP_001154883.1Re-query CCDS DB by Nucleotide ID:NM_001161411Re-query CCDS DB by Protein ID:NP_001154883
Current member NCBI NM_001161411.2 NP_001154883.1 Accepted alive Link to Nucleotide Sequence:NM_001161411.2Link to Protein Sequence:NP_001154883.1Re-query CCDS DB by Nucleotide ID:NM_001161411Re-query CCDS DB by Protein ID:NP_001154883Link to BLAST:NP_001154883.1

Chromosomal Locations for CCDS 49040.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 28710361 28710387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 28711872 28711984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 28721052 28721190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 28722363 28722476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 28737733 28737849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 28746299 28747531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1743 nt):
ATGGAAACAGCTAAAGATGGTGAGCAGAGCCCAAGTGAGGCATCTCCTTCAGCCCAGGCAGGTCCTGAAA
ACATCCCGGAGCCTATGTCTCGGGAGGAGGAGAGCCAGCCATTGTACCATGAAGAGACCATTGATCTTGG
TGGAGATGAGTTTGCATCTGAAGAGAACGAGCCCACATCGGAAGGGTCTCACAACTTCGGAGATAAGCTT
AATGAGCACATGATGGAAAGTGTGCTCATCTCCGACTCTCCTAACAACAGCGAGGGGGACGTTGGCGACC
TCGGCTGTCTACAGGATGTTGGGGAGCCCCCCAGAGGTGCCACTGATCACCGACTGCCCAGTAGCACAGA
CAAAGAAGTGGTGGACACTCTGAGTAATGGCAGTGAAACCGATGGAGACGACACTCCCAGAGACATCTCA
GACATGACACCTGATAGCAGAGCCTCTCTGAAGGAAGACTCAACACAGGAAGATGTGACGAGCATGCCTG
CACTGGAGAATGCTGCCACGGAGGAAGTCGGGCCTAAGGACAGCCTCGCGCCCCGAGAAGAGCAGACCTC
AGAAGTGTCCTCCAATCAGTCCTCCTCCAAAGACGAGCCCTTGCCCGTCTGCACCATCTTCAGCCAGGCT
ACCGCCACTCCCTCCCAGCCACACCTGTTTCTACAGGATGGCTTCGAGTCCCAGATGGTGAAATCACCCA
GTTTCAGTAGCACCAGTGAGACGTCAGCCAAGACCCCTCCTCCGATGGTCCAGCCCAGTCCCAGCCTCAG
TACATTTTTTGGAGATACAATGAGCTCTAATTCCTTGGCCTCTGACTTCTTTGATTCCTTCACAACTTCT
ACTTTCATTTCAGTCAGTAATCCCAATGCAGGTTCCCCAGTTCCAGAAAAGCTGTCTTCACTCACTGCCC
CTGTAGGAGAGAAGTCCCCGGATTCCACCAGCCCATCTTACTCCACAAGGATGGATAGATCGGAATCAGG
TGTTTCTCGGGCCCCTCTGGATGTCCCTGAATCTCCAAAGCCATTTTCACAGATCCAGGCTGTGTTTGCT
GGAAGTGATGACCCCTTCGCCACAGCCCTGAGCATGAGTGAGATGGACCGGAGGAATGACGCATGGCTTC
CCAGTCAGGCGACCAGAGAAGTCCTGATGTCAGTAGCAACCCAGCAGTATGGCACTGTGTTCATAGACAA
GGAGAACCTCACTATGCCTGGCCTCAAGTTTGACAACATTCAGGGAGATGCAGTTAAAGACTTGATGCTT
CGCTTCCTGGGTGAGAAGGCTGCAGCAAAGAGACAGGTCTTAAATGCCAGCTCAGTGGAGCAGTCCTTTG
TGGGGCTGAAGCAGCTCATTAGCTGCAGGAACTGGAGGGCAGCAGTCGACCTGTGTGGACGCCTGCTCAC
AGCCCACGGACAAGGCTATGGCAAGAATGGGCTGCCCACCAGCCACACCACAGACTCCTTGCAGCTCTGG
TTTGTGAGGTTGGCGCTGCTGGTGAAGTTGGGCCTTTTCCAGAATGCTGAGATGGAGTTTGAACCCTTTG
GAAATCTGGATCAACCAGACCTATACTATGAATACTACCCACACGTGTACCCAGGACGCAGGGGCTCCAT
GGTCCCCTTTTCGATGCGTATTCTGCATGCAGAACTGCAGCAGTATCTGGGGAACCCACAGGAGTCCCTG
GACCGATTACACAGGGTCAAGACCGTCTGCAGCAAGCACATGCATCCCCTCCGACTGGTGTGA

Translation (580 aa):
METAKDGEQSPSEASPSAQAGPENIPEPMSREEESQPLYHEETIDLGGDEFASEENEPTSEGSHNFGDKL
NEHMMESVLISDSPNNSEGDVGDLGCLQDVGEPPRGATDHRLPSSTDKEVVDTLSNGSETDGDDTPRDIS
DMTPDSRASLKEDSTQEDVTSMPALENAATEEVGPKDSLAPREEQTSEVSSNQSSSKDEPLPVCTIFSQA
TATPSQPHLFLQDGFESQMVKSPSFSSTSETSAKTPPPMVQPSPSLSTFFGDTMSSNSLASDFFDSFTTS
TFISVSNPNAGSPVPEKLSSLTAPVGEKSPDSTSPSYSTRMDRSESGVSRAPLDVPESPKPFSQIQAVFA
GSDDPFATALSMSEMDRRNDAWLPSQATREVLMSVATQQYGTVFIDKENLTMPGLKFDNIQGDAVKDLML
RFLGEKAAAKRQVLNASSVEQSFVGLKQLISCRNWRAAVDLCGRLLTAHGQGYGKNGLPTSHTTDSLQLW
FVRLALLVKLGLFQNAEMEFEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESL
DRLHRVKTVCSKHMHPLRLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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