NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49062.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49062.1 Public Mus musculus 12 G2e3 23 108 98 CCDS HistoryNCBI Gene:217558Re-query CCDS DB by CCDS ID:49062.1Re-query CCDS DB by GeneID:217558See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49062.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121521.1 ENSMUSP00000113191.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121521.1Link to Ensembl Protein Viewer:ENSMUSP00000113191.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121521Re-query CCDS DB by Protein ID:ENSMUSP00000113191
Original member Current member NCBI NM_001167964.1 NP_001161436.1 Accepted alive Link to Nucleotide Sequence:NM_001167964.1Link to Protein Sequence:NP_001161436.1Re-query CCDS DB by Nucleotide ID:NM_001167964Re-query CCDS DB by Protein ID:NP_001161436Link to BLAST:NP_001161436.1

Chromosomal Locations for CCDS 49062.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 51351409 51351445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51353604 51353701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51353800 51353901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51355881 51356005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51357027 51357192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51359742 51359848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51360931 51361047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51363186 51363310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51363417 51363546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51367752 51367956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51369046 51369218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51371560 51371750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51372430 51372722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGAATGAAAATAAACCTGATAATTCACAAAGTCTTGCTTGTGTTTTCTGCCGAAAAAATGATGACTGTC
CCAATAAATACGGAGAAAAGAAAACATATGAAAAATGGAATTTTAGTGTCCACTACTACTGCTTGTTAAT
GTCAAGTGGAATTTGGCAGAGAGGTAAAGAAGAAGAAGGAGTTTATGGCTTCCTAATAGAAGACATCAGG
AAGGAAGTCCAGAGAGCCTCCAAACTGAAGTGTACAGTTTGCAAGAAGAATGGTGCTTCAATTGGATGTG
TGGTACCCACGTGTAAACGAAGTTATCACTTGCCTTGTGGACTTCAGAAAGAATGTATTTTCCAGTTCAC
TGACAATTTTGCGTCATTTTGCTGGAAACATCGACCCGTTCAAGCAATTACATCTAATAAATATAGTAGT
TCTTTACCATGTACTATCTGTTTGGAATTTGTCGAGCCTATTCCTACTTATAACATACTACAAAGTCCCT
GTTGTAAGAATGCTTGGTTTCATAGAGACTGTTTACAGGTCCAAGCAATAAATGCAGGAGTGTTTTTCTT
TAGATGTACACTATGCAATAATACAGACATCTTTCAGAAGGAGATGTTGAGAATGGGAATTCATATTCCT
GAAAAAGATGCATCCTGGGAATTAGAAGAAAACGCGTATCAAGAGCTGCTGCAGAGCCACGACCGCTGTG
ATATTCGAAGATGTCACTGCAAAAAAGGCCGAGACTACAACGAACCTAACAGCAAATGGGAAGTAAAGCG
GTGTCAGAGTTGTGGTTCTAGTGGAACACACTTAGCCTGTTCCTCACTACAGTCTTGGGAACAAAATTGG
GAGTGTTTGGACTGTAGAAGAATTACCTACACTTCAGATTTCCAAAAGGCCCCCAAACACCCATTAGCCA
ACTCTACTAATGTGACAGTTACTGACTGCTTGTTGGAAGAGTCATCATCTAAGCTCCCCAGACAGTCAAC
TGTAGCCCAGCATAAAGAACTACTGAGTTTATTTTTATCTGTATTTACAGCTGTGAAAGAGAATCTTTAC
TATGAAGTTGGCAAAATGCTTGCCATTTCTTTAGTTCATGGTGGTCCTTCGCCTGGTTTCTTTTCTGAAA
CCTTGTTTAACTGCCTTGCTTATGGACCAGAAAATACTCTACCAACTTTGGATGATGTATCAGACATTGA
TGTTGCACAGATTATAATCAAGATAGATTCTGCAACTGATTTAAACATTTTAAATTCAGTAATAAGCCAA
CACTATAACTACTTAGAGGTCAGTGGATGTTTAAGACTTACGACATCATTAAGTGATAAATTCATGTTGG
TAAAAGACATCCTTTTCTACCATGTAATTAATAGAGTCAAGGCACCTTTTGAGAGTTTTAAACAGGGTCT
GAAAACGCTTGGTGTTTTAGAGAAAATTCAAACTTACCCAGAAGCATTTTATAAGATCCTATGTCATAAA
CCTGAGAATCTCTCTGCAAAAAACCTCAGTGACCTCTTCACAATTCACTCGGTAGCGGACGTACAGACTT
TGAGGTTTTGGAACAGTTACTTAAAGGCTATAGAGGATGGTAAATCTGCAACAACGATGGAAGATATTCT
TATTTTTGCAACTGGCTGTAGTTCTGTCCCACCAACTGGATTTAAACCCTCTCTGTCAGTTGAATGTCTA
CATGTGGATTTTCCTGTTGCAGACAAATATAGAAACCATTTAGTTCTACCAGCCACCAACACGTATGAAG
AGTTCCAAGAAAATATGGATTTCACCATAAGAGACACTCTAAGATTAGAAAAGGAAGAAAGGTCTCACAT
ACTACCTCGGACATTAAATGTTTCTTCTAATGAAGAAATGCTTATTTAA

Translation (622 aa):
MNENKPDNSQSLACVFCRKNDDCPNKYGEKKTYEKWNFSVHYYCLLMSSGIWQRGKEEEGVYGFLIEDIR
KEVQRASKLKCTVCKKNGASIGCVVPTCKRSYHLPCGLQKECIFQFTDNFASFCWKHRPVQAITSNKYSS
SLPCTICLEFVEPIPTYNILQSPCCKNAWFHRDCLQVQAINAGVFFFRCTLCNNTDIFQKEMLRMGIHIP
EKDASWELEENAYQELLQSHDRCDIRRCHCKKGRDYNEPNSKWEVKRCQSCGSSGTHLACSSLQSWEQNW
ECLDCRRITYTSDFQKAPKHPLANSTNVTVTDCLLEESSSKLPRQSTVAQHKELLSLFLSVFTAVKENLY
YEVGKMLAISLVHGGPSPGFFSETLFNCLAYGPENTLPTLDDVSDIDVAQIIIKIDSATDLNILNSVISQ
HYNYLEVSGCLRLTTSLSDKFMLVKDILFYHVINRVKAPFESFKQGLKTLGVLEKIQTYPEAFYKILCHK
PENLSAKNLSDLFTIHSVADVQTLRFWNSYLKAIEDGKSATTMEDILIFATGCSSVPPTGFKPSLSVECL
HVDFPVADKYRNHLVLPATNTYEEFQENMDFTIRDTLRLEKEERSHILPRTLNVSSNEEMLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH