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Report for CCDS49066.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49066.1 Public Mus musculus 12 Fam177a2 23 108 98 CCDS HistoryNCBI Gene:100101807Re-query CCDS DB by CCDS ID:49066.1Re-query CCDS DB by GeneID:100101807See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49066.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000177978.2 ENSMUSP00000137377.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177978.2Link to Ensembl Protein Viewer:ENSMUSP00000137377.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177978Re-query CCDS DB by Protein ID:ENSMUSP00000137377
Original member Current member NCBI NM_001100116.1 NP_001093586.1 Accepted alive Link to Nucleotide Sequence:NM_001100116.1Link to Protein Sequence:NP_001093586.1Re-query CCDS DB by Nucleotide ID:NM_001100116Re-query CCDS DB by Protein ID:NP_001093586Link to BLAST:NP_001093586.1

Chromosomal Locations for CCDS 49066.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 55199706 55199786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55205680 55205853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55210732 55210798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55212182 55212279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55213840 55214043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (624 nt):
ATGGAGCGTGAGTCGGGATGCGCGGCGGCGGGAGAGACCGAGGCAGCGGCCGCCACGGCGTTCCGAGACG
CGACACGGCAGATAAGTAATGAAAGAGGATTTGAGAATGTAGAACTGGGCGTCATGGGGAAGAAGAAGAA
AGTCCCGAGGAGGGTCATCCACTTTGTCAGTGGAGAGACAATGGAGGAGTACAGCACCGACGAGGACGAG
GTGGACGGCCTGGACAAGAAGGACGTGCTGCCCACTGTCGACCCGACAAAACTTACCTGGGGCCCCTACC
TATGGTTTTACATGCTGCGGGCCGCCACATCAACCCTCTCAGTGTGTGACTTTCTTGGAGAGAAGATTGC
GTCAGTTTTGGGCATCAGCACCCCAAAATACCAGTACGCCATTGATGAGTATTACCGGATGAAGAAGGAG
GAGGAGGAGGAGGAAGAAGAAAATAGGATGTCAGAAGAAGCAGAAAGACAATACCAACAAAACAAGCTGC
AGGCCGATTCCATTGTACAGACAGACCAACCAGAAACAGTGTCGTCCAGCTTTGTAAATATTAATTTTGA
AATGGAGGAAGACTGTGAAGCAATTAAGGAAAACAAACAGCGTCCAGTCTCTGTCCCACCATAG

Translation (207 aa):
MERESGCAAAGETEAAAATAFRDATRQISNERGFENVELGVMGKKKKVPRRVIHFVSGETMEEYSTDEDE
VDGLDKKDVLPTVDPTKLTWGPYLWFYMLRAATSTLSVCDFLGEKIASVLGISTPKYQYAIDEYYRMKKE
EEEEEEENRMSEEAERQYQQNKLQADSIVQTDQPETVSSSFVNINFEMEEDCEAIKENKQRPVSVPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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