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Report for CCDS49071.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49071.1 Public Mus musculus 12 Mia2 23 108 98 CCDS HistoryNCBI Gene:338320Re-query CCDS DB by CCDS ID:49071.1Re-query CCDS DB by GeneID:338320See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49071.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170992.8 ENSMUSP00000126538.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170992.8Link to Ensembl Protein Viewer:ENSMUSP00000126538.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000170992Re-query CCDS DB by Protein ID:ENSMUSP00000126538
Original member Current member NCBI NM_001165253.3 NP_001158725.1 Accepted alive Link to Nucleotide Sequence:NM_001165253.3Link to Protein Sequence:NP_001158725.1Re-query CCDS DB by Nucleotide ID:NM_001165253Re-query CCDS DB by Protein ID:NP_001158725Link to BLAST:NP_001158725.1

Chromosomal Locations for CCDS 49071.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 59131545 59131604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59136064 59136195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59137581 59137602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59137698 59137786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59146847 59146957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59147852 59147923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59149464 59149568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59154356 59154478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59158253 59158367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59159591 59159637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59160176 59160266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59162881 59163019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59168934 59169035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59170258 59170318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59170957 59170992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59172525 59172592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59174106 59174188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59176331 59176459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59179850 59180008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59184187 59184303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59185729 59185787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59188311 59188545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59189636 59189799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2319 nt):
ATGGCCGGGCCTGGGGCGGCGGCGGGTTGCGCGCGGCGGGTTCTGGAGCAGCTGCGCTGGGTTGTGGCAG
CATTGCCTGAAGATATGAGAGCAGACTTTAATCCCAGTGGTTTTTCGTTGGAATTGGCAGTATGTGTGCT
TTCCGTTGGACTGCTTGCCGTGGTCTTGTTTCTGTGGCGAGGCTTCCGATCAATTCGAAGCCGATTTTAT
GTGGGGAGAGAAAAGAAACTTGCTCTTGAGCTTTCTGCACTAATTGAAGAAAAATGTAAACTGCTTGACA
AAGTCAGCATTGTTCAAAAGGAGGCCACCTATGAAAATCTGGAACAATCCAAATCTAAACTTGAAGATGA
AATACTACTCCTAGAGGAAAAGCTGGAAGAAGAGCGAGCTAAACATTCTGAACAAGACGAGCTGATGGCT
GATATTTCAAAAAGGATACAGTCCCTAGAAGATGAATCAAAATCTCTCAAATCGCAAGTAGCTGAAGCCA
AAACAACCTTTAGAATATTTGAAATCAATGAAGAGCGACTCAAGGGAGCAATAAAAGATGCCTTGAATGA
AAATTCTCAGCTTCAGGAAAGCCAGAAACAGCTTTTACAGGAAACTGAAATGATGAAAGAACAAGTGAAT
GATCTCGATAAACAGAAAGTGGCATTGGAAGAGTCCAGAGCACAGGCGGAACAAGCTCTGAGTGAGAAGG
AGAGTCAGATTGAGACTCTGGTCACGAGCCTGCTAAAGATGAAGGATTGGGCTGCTGTGCTTGGAGAAGC
AGATGATGGGAATCTGGACTTGGACATGAAGAGTGGCCTAGAAAACACTGCTGCCTTAGATAATCAGCCA
AAGGGCGCTTTGAAGAAGCTGATTTATGCAGCTAAGTTAAATGCTTCTTTAAAAGCCTTGGAAGGAGAAC
GAAATCAAGTTTACACTCAGTTATCTGAAGTGGATCAAGTAAAAGAAGACCTTACAGAGCATATCAAAAG
TCTTGAGTCTAAACAAGCATCTTTGCAGTCAGAAAAGACAGAGTTTGAAAGTGAGAGCCAGAAACTTCAG
CAGAAACTGAAAGTGATAACCGAGCTGTACCAAGAAAATGAAATGAAACTTCACAGGAAATTAACAGTAG
AAGAAAATTACCGATTAGAGAAAGAAGAAAAACTTTCCAAAGTAGATGAGAAAATCAGCCATGCGACCGA
GGAGCTGGAGACCTGCAGGCAGCGTGCCAAGGATCTTGAAGAAGAGCTGGAGAGAACAATTCATTCTTAC
CAGGGGCAGGTTATTTCTCATGAAAAAAAAGCACATGATAATTGGCTGGCAGCTCGGACTCTTGAAAGAA
ATCTCAATGATTTAAGAAAAGAAAATGCCCACAACAGACAAAAATTAACTGAAACAGAGTTTAAATTTGA
ACTTTTAGAAAAAGATCCTTATGCACTTGATGTTCCAAACACAGCATTTGGCAGAGAGCACTCCCCATAT
GGTCCCTCACCATTGGGCCGACCTCCATCTGAAACGAGAGCTTTTCTCTCTCCTCCAACTTTGTTGGAGG
GTCCACTAAGACTCTCACCTTTGCTTCCAGGGGGAGGAGGAAGAGGCTCACGAGGCCCTGAGAACCTTCT
GGACCATCAGATGAACACTGAAAGAGGAGAGTCAAGCTATGACAGATTATCTGATGCTCCCAGAGCACCT
TCCGACAGGTCCCTGTCACCTCCGTGGGAACAAGATCGAAGGATGACAGCCCATCCGCCACCAGGCCAAC
CATATTCTGATCCAGCTCTACAAAGGCAAGATCGGTTTTATCCTAATTCTGGTAGACTCTCTGGACCAGC
AGAACTCAGAAGTTATAATATGCCCTCTTTGGATAAAGTGGATGGGCCAGTACCCTCAGAAATGGAGTCC
AGTGGAAACGGTACCAAAGATAATCTTGGTAACTCTAATGTGCCTGATTCTCCTATCCCTGCTGAATGCG
AAGCAGCTGGCCGTGGCTTCTTCCCTCCACCCTTTCCTCCAGTCAGAGACCCATTGTTTCCAGTGGATCC
AAGGAGCCAGTTCATGAGAAGGGGCCCCTCTTTCCCCCCACCTCCTCCAGGAAGCATCTATGCAGCTCCT
CGAGATTATTTTCCACCAAGGGACTTCCCTGGCCCACCACTTCCTCCGTTCCCAGGGAGAACTGTGTACG
CACCGAGGGGCTTTCCACCTTACCTTCCCCCCAGAGCTGGGTTCTTCCCCCCACCCCCACATCCTGAAAG
TAGAAGTGAGCTCCCCCCAGACTTGATTCCGCCTTCAAAAGAGCCTGCAGCTGACCCTCCAGAAACACAG
GAGGCCTGA

Translation (772 aa):
MAGPGAAAGCARRVLEQLRWVVAALPEDMRADFNPSGFSLELAVCVLSVGLLAVVLFLWRGFRSIRSRFY
VGREKKLALELSALIEEKCKLLDKVSIVQKEATYENLEQSKSKLEDEILLLEEKLEEERAKHSEQDELMA
DISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKEQVN
DLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVLGEADDGNLDLDMKSGLENTAALDNQP
KGALKKLIYAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQ
QKLKVITELYQENEMKLHRKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSY
QGQVISHEKKAHDNWLAARTLERNLNDLRKENAHNRQKLTETEFKFELLEKDPYALDVPNTAFGREHSPY
GPSPLGRPPSETRAFLSPPTLLEGPLRLSPLLPGGGGRGSRGPENLLDHQMNTERGESSYDRLSDAPRAP
SDRSLSPPWEQDRRMTAHPPPGQPYSDPALQRQDRFYPNSGRLSGPAELRSYNMPSLDKVDGPVPSEMES
SGNGTKDNLGNSNVPDSPIPAECEAAGRGFFPPPFPPVRDPLFPVDPRSQFMRRGPSFPPPPPGSIYAAP
RDYFPPRDFPGPPLPPFPGRTVYAPRGFPPYLPPRAGFFPPPPHPESRSELPPDLIPPSKEPAADPPETQ
EA


Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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