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Report for CCDS49096.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49096.1 Public Mus musculus 12 Garin2 23 108 98 CCDS HistoryNCBI Gene:70897Re-query CCDS DB by CCDS ID:49096.1Re-query CCDS DB by GeneID:70897See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49096.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077968.4 ENSMUSP00000077119.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077968.4Link to Ensembl Protein Viewer:ENSMUSP00000077119.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000077968Re-query CCDS DB by Protein ID:ENSMUSP00000077119
Original member NCBI NM_029069.1 NP_083345.1 Updated not alive Link to Nucleotide Sequence:NM_029069.1Link to Protein Sequence:NP_083345.1Re-query CCDS DB by Nucleotide ID:NM_029069Re-query CCDS DB by Protein ID:NP_083345
Current member NCBI NM_029069.2 NP_083345.1 Accepted alive Link to Nucleotide Sequence:NM_029069.2Link to Protein Sequence:NP_083345.1Re-query CCDS DB by Nucleotide ID:NM_029069Re-query CCDS DB by Protein ID:NP_083345Link to BLAST:NP_083345.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083345.1 440 D3YV92 440 100% 0 0

Chromosomal Locations for CCDS 49096.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 78710271 78710426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78712064 78712263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78714920 78715499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78719395 78719633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78728236 78728264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78734171 78734205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 78734306 78734389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGATGAAGAAGAACAGGAACAAGAAGGCAATGAATAAGCAAGAAGCCCTCTTTATCCCACACTATTACA
GACTCGGGCATCTTAAGAACATATTGGATGGAGGAGAGTATGCCCCTTATGTATCTCCTCCTATACTGGA
GAGCAATTTTATTCAGGTCAATAGGAGAGGTGAATCTATTTACCTGCATAACCGAGCAAACTGGGTGACC
GTAGGCATCTGTTCTTCCAATCCCATCTTCAAGACCCCCAATATGATGCTGTTGGCACATCTGACACCAG
AAGCTCGAAAAGAACCAGAACCCCTCTTTAAAACCCTTCTGAAGTCTTCCTCTTCAGGGACTCTGGTGCT
CACCAGGTTTATCCCTCTGCAGTTTGTGACTCTCTCTGTGCACAGTGCTAAGAACATGCGTCTCAAGGTG
AAGCTGATCAACGGCCGCTCCTACTACTTACAGCTCTGTGCTCCTGTGTATAAACAGGATATCATATTTT
CTCAGTGGGTAGACCTCATCCCCCTCCTGAATCAGGAGAAAATCAAAAATACCAAAGTCTCCGAGGTCTC
GAGCCTTTCAGAACTCACAAACAGCACGGACATCGCAGGCTCGATGGACATCACGGACATCACTGCTTTC
AGAGAACTGCGGCCCAGGCACCCGAAAACACACAGATACCCTTGTAACATCATGGAAAGTGCAGACTTCT
CAGAATATACAGATGTCACTGATGTCACAGATGTCACTGATGTCACCGATATGCTGGACAACGGGATCAC
AGATGTTCAAGATATAAAAATTGTCACAGAAGTCACAGAAGTCACAGAAGTCACAGAAGTCACAGAAGTC
TCAGAAGTCTCAGACGTCAAAATGGCCACAAACATCTCAGGGGTCAAAATAGTATTTGAAAACGATGATA
TAATAAAGACCAAGCAGGAGGAAAAGGAATATACCCTGAAACATAGGAGTCTACAAGATACAAAAACTAA
GAGTGACTACCAAGATTCCCCAAATCCTGTCACCATGTCAAACATAGCCCTGGCTTTGCAAGATGAAGGG
TGTTTTCAGACTACTCAGACTCCTGTAAAAAGCAAGGAAGACATATACAAAGAAATATGTGATGAAACTT
CTGAAGAAAATATGATTCGTCTTCAAAACATACATTTAAAGGCCACGGAATCCAGGAGTACAAGAACTGA
TTCAGACATTTCAGATGGTGAACTGAAGCTTGGAAGATATTTGCACAAGCAGTGCTCCTCTAGAGAACAA
TCCTTTATCCACTCTCTTGGCTCACTGCCCAGGGGATTTGTCTTCCTTCACCTGCTGCTCTAA

Translation (440 aa):
MMKKNRNKKAMNKQEALFIPHYYRLGHLKNILDGGEYAPYVSPPILESNFIQVNRRGESIYLHNRANWVT
VGICSSNPIFKTPNMMLLAHLTPEARKEPEPLFKTLLKSSSSGTLVLTRFIPLQFVTLSVHSAKNMRLKV
KLINGRSYYLQLCAPVYKQDIIFSQWVDLIPLLNQEKIKNTKVSEVSSLSELTNSTDIAGSMDITDITAF
RELRPRHPKTHRYPCNIMESADFSEYTDVTDVTDVTDVTDMLDNGITDVQDIKIVTEVTEVTEVTEVTEV
SEVSDVKMATNISGVKIVFENDDIIKTKQEEKEYTLKHRSLQDTKTKSDYQDSPNPVTMSNIALALQDEG
CFQTTQTPVKSKEDIYKEICDETSEENMIRLQNIHLKATESRSTRTDSDISDGELKLGRYLHKQCSSREQ
SFIHSLGSLPRGFVFLHLLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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