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Report for CCDS49137.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49137.1 Public Mus musculus 12 Sel1l 23 108 98 CCDS HistoryNCBI Gene:20338Re-query CCDS DB by CCDS ID:49137.1Re-query CCDS DB by GeneID:20338See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49137.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167466.1 ENSMUSP00000129384.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167466.1Link to Ensembl Protein Viewer:ENSMUSP00000129384.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167466Re-query CCDS DB by Protein ID:ENSMUSP00000129384
Original member Current member NCBI NM_011344.2 NP_035474.1 Accepted alive Link to Nucleotide Sequence:NM_011344.2Link to Protein Sequence:NP_035474.1Re-query CCDS DB by Nucleotide ID:NM_011344Re-query CCDS DB by Protein ID:NP_035474Link to BLAST:NP_035474.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035474.1 740 Q9Z2G6-2 740 100% 0 0

Chromosomal Locations for CCDS 49137.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 91809844 91810053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91811877 91812005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91813832 91814004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91814619 91814693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91814974 91815139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91815766 91815914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91816221 91816308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91817282 91817344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91818219 91818296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91820042 91820110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91823534 91823590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91824820 91824974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91825297 91825378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91826505 91826564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91826652 91826705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91830687 91830849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91831569 91831674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91833205 91833222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91841638 91841854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91843226 91843263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91848959 91849031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2223 nt):
ATGCAGGTCCGCGTCAGGCTGTCGTTGCTGCTGCTCTGCGCGGTGCTCCTGGGCTCGGCAGCCGCGACCT
CGGATGACAAAACTAACCAGGATGACTCCTTAGATTCCAAGAGTTCTTTGCCCACAGATGAGTCAGTGAA
GGACCACACCACCACGGGCAAAGTAGTTGCTGGCCAGATATTTGTTGATTCTGAAGAAGCAGAAGTGGAA
TCCCTTCTTCAGGACGAGGAAGATAGCTCCAAGACCCAGGAGGAAGAGATCAGCTTTTTAGAATCTCCGA
ATCCAAGCAGCAAGACCTACGAAGAACTAAAGAGAGTGCGGAAGCCAGTCTTGACTGCCATTGAAGCTGA
AGAAGATGCTGCCAAAAGACGACAGATGCAGGAAGCAGAGATGATCTATCAGGCCGGGATGAAGATACTG
AATGGAAGCAATAGGAAGAGCCAAAAGAGAGAAGCATATCGGTACCTTCAGAAGGCAGCAGGCATGAATC
ACACCAAAGCCCTGGAGAGAGTGTCCTATGCTCTCTTGTTTGGTGATTACCTCACACAGAATATCCAGGC
AGCCAAAGAGATGTTTGAGAAACTGACTGAGGAAGGGTCTCCCAAAGGACAGACTGGTCTTGGCTTTCTC
TACGCTTCTGGGCTTGGTGTTAATTCAAGTCAGGCAAAGGCTCTTGTATATTATACTTTCGGAGCTCTTG
GAGGCAACCTGATAGCCCATATGATTTTGGGTTACCGCTACTGGGCTGGCATCGGAGTCCTCCAGAGTTG
TGAGTCGGCACTGACCCATTATCGTCTTGTTGCCAATCATGTTGCTAGTGATATCTCCCTAACTGGAGGC
TCTGTAGTCCAGAGAATACGGCTGCCCGATGAAGTGGAAAACCCGGGGATGAACAGTGGGATGCTGGAAG
AAGACCTGATTCAGTATTACCAGTTCCTAGCTGAGAAGGGTGACGTCCAAGCACAGGTTGGCCTGGGACA
GCTGCATCTGCATGGAGGGCGTGGAGTAGAACAGAATCACCAGAGAGCGTTTGACTACTTCAACTTAGCA
GCAAATGCTGGCAATTCACATGCTATGGCCTTCCTGGGAAAGATGTATTCTGAAGGAAGTGACATCGTAC
CTCAGAGTAATGAGACGGCACTTCACTACTTTAAGAAAGCTGCTGACATGGGCAACCCCGTGGGACAGAG
CGGGCTTGGAATGGCCTACCTCTACGGAAGAGGCGTTCAAGTTAATTATGACCTGGCCCTCAAGTATTTC
CAGAAAGCTGCTGAGCAAGGCTGGGTGGACGGGCAGCTGCAGCTCGGCTCTATGTACTACAATGGCATTG
GAGTCAAGAGAGATTATAAGCAGGCCTTGAAGTATTTTAATCTGGCTTCTCAAGGAGGCCATATCTTGGC
TTTCTATAACCTCGCACAGATGCACGCCAGCGGCACAGGGGTGATGCGGTCCTGTCACACTGCAGTGGAG
TTGTTTAAGAATGTGTGTGAGCGAGGTCGCTGGTCAGAGAGACTGATGACTGCCTACAACAGCTATAAGG
ATGAGGACTACAATGCTGCAGTGGTCCAGTACCTCCTGCTGGCTGAGCAGGGCTACGAGGTGGCGCAGAG
CAACGCAGCCTTCATCCTCGACCAGAGAGAAGCAACCATTGTAGGTGAGAATGAAACTTACCCCAGAGCT
TTACTGCATTGGAACAGGGCCGCCTCCCAAGGTTACACTGTGGCTAGAATTAAGCTTGGAGACTACCACT
TCTATGGCTTTGGCACTGATGTGGATTATGAGACCGCATTTATTCATTACCGCCTGGCTTCTGAGCAGCA
GCACAGCGCCCAAGCTATGTTTAACCTGGGCTACATGCACGAGAAGGGCCTAGGCATTAAACAGGACATT
CACCTTGCAAAACGCTTTTATGACATGGCAGCCGAAGCTAGCCCAGATGCACAAGTACCTGTGTTCCTCG
CACTCTGCAAATTAGGTGTCGTCTATTTCTTACAGTACATACGGGAAGCAAACATTCGAGATCTATTCAC
ACAACTGGATATGGACCAGCTTTTGGGACCCGAGTGGGACCTTTACCTCATGACCATCATTGCACTGCTC
TTGGGTACAGTCATAGCTTACAGGCAGCGACAGCACCAGGACATACCAGTTCCCAGGCCCCCAGGGCCAC
GGCCGGCTCCTCCCCAGCAGGAAGGACCACCAGAGCAGCAGCCACCACAGTAG

Translation (740 aa):
MQVRVRLSLLLLCAVLLGSAAATSDDKTNQDDSLDSKSSLPTDESVKDHTTTGKVVAGQIFVDSEEAEVE
SLLQDEEDSSKTQEEEISFLESPNPSSKTYEELKRVRKPVLTAIEAEEDAAKRRQMQEAEMIYQAGMKIL
NGSNRKSQKREAYRYLQKAAGMNHTKALERVSYALLFGDYLTQNIQAAKEMFEKLTEEGSPKGQTGLGFL
YASGLGVNSSQAKALVYYTFGALGGNLIAHMILGYRYWAGIGVLQSCESALTHYRLVANHVASDISLTGG
SVVQRIRLPDEVENPGMNSGMLEEDLIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLA
ANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYF
QKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVE
LFKNVCERGRWSERLMTAYNSYKDEDYNAAVVQYLLLAEQGYEVAQSNAAFILDQREATIVGENETYPRA
LLHWNRAASQGYTVARIKLGDYHFYGFGTDVDYETAFIHYRLASEQQHSAQAMFNLGYMHEKGLGIKQDI
HLAKRFYDMAAEASPDAQVPVFLALCKLGVVYFLQYIREANIRDLFTQLDMDQLLGPEWDLYLMTIIALL
LGTVIAYRQRQHQDIPVPRPPGPRPAPPQQEGPPEQQPPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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