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Report for CCDS49224.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49224.1 Public Mus musculus 13 Prl7a1 23 108 98 CCDS HistoryNCBI Gene:19113Re-query CCDS DB by CCDS ID:49224.1Re-query CCDS DB by GeneID:19113See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49224.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095924.10 ENSMUSP00000093614.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095924.10Link to Ensembl Protein Viewer:ENSMUSP00000093614.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095924Re-query CCDS DB by Protein ID:ENSMUSP00000093614
Original member Current member NCBI NM_001164058.1 NP_001157530.1 Accepted alive Link to Nucleotide Sequence:NM_001164058.1Link to Protein Sequence:NP_001157530.1Re-query CCDS DB by Nucleotide ID:NM_001164058Re-query CCDS DB by Protein ID:NP_001157530Link to BLAST:NP_001157530.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157530.1 266 O54830-1 266 100% 0 0

Chromosomal Locations for CCDS 49224.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 27633479 27633700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27635691 27635870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27637553 27637663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27639081 27639119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27639851 27639889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27640641 27640819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27642420 27642450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (801 nt):
ATGCCGCTGTCTTTCACTCAACCATGCTCCTCAGGGGCACTTCTGCTGCTGGTGGTGTCAAACCTCCTTT
TATGGGAGAATGTGGCCTGTCTACCTTTAAGCAGCAATGATACTGATGATGATCCACTATCCATCAAGGG
ACTGTTGGATCATGCCATGATACTTTCTAAGAATATCACTGACCTCAACATGGAGTTGCGCAGGATATTT
ACCATCAGTGAGATGTCAGCTAAACTTATTGATAAATTTCTAAGTTCATCATCATCATCAGACTCCTATG
ATCAATTTATGCTTGAATTTCTTGGGCAGCAGGAGTTACTGACTAAGAACCTCACCTACTGCCACAAATA
CTCCATCAAAGTTCCCGAAGACATAGAAGAAGCCCAAAATGTCATCTCTCTTGAAGACTTTCCAATCTTG
ATACTCAGTAGAATGCAGGCTTGGAATGAAACTCTGAAAAACCGAATCAACCTATCTGAAGGTACACCAG
GAATAGACGATGATATCCTCCCTATATATAAAAATATTGAGACAAAAATTGCAGAACTTCTTGAGGACAG
CAAGAGTATACTCAGCCAGGCTTATGGAGCAACAGAAAATGTGGCTGATTACACCCTCTGGTCTGGTCTT
GAAGACCTTCAATCATCTGATGAAGAAACTCGATTTTTGGCTCTTTGTAAATTATCCTATTGTTTGCATG
TTGATATCCACACAGCTAACTTTTATCTCCAGTTCTTGAGGTGTGTGGCTCTTGTTAATAGTGACAGCTG
CTTATCTTCCAAAACTGGAAATGATTCATGA

Translation (266 aa):
MPLSFTQPCSSGALLLLVVSNLLLWENVACLPLSSNDTDDDPLSIKGLLDHAMILSKNITDLNMELRRIF
TISEMSAKLIDKFLSSSSSSDSYDQFMLEFLGQQELLTKNLTYCHKYSIKVPEDIEEAQNVISLEDFPIL
ILSRMQAWNETLKNRINLSEGTPGIDDDILPIYKNIETKIAELLEDSKSILSQAYGATENVADYTLWSGL
EDLQSSDEETRFLALCKLSYCLHVDIHTANFYLQFLRCVALVNSDSCLSSKTGNDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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