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Report for CCDS49248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49248.1 Public Mus musculus 13 Tmem170b 23 108 98 CCDS HistoryNCBI Gene:621976Re-query CCDS DB by CCDS ID:49248.1Re-query CCDS DB by GeneID:621976See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49248.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000129449.2 ENSMUSP00000131144.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000129449.2Link to Ensembl Protein Viewer:ENSMUSP00000131144.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000129449Re-query CCDS DB by Protein ID:ENSMUSP00000131144
Original member Current member NCBI NM_001163572.2 NP_001157044.1 Accepted alive Link to Nucleotide Sequence:NM_001163572.2Link to Protein Sequence:NP_001157044.1Re-query CCDS DB by Nucleotide ID:NM_001163572Re-query CCDS DB by Protein ID:NP_001157044Link to BLAST:NP_001157044.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157044.1 132 P86050 132 100% 0 0

Chromosomal Locations for CCDS 49248.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 41606216 41606312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41627978 41628148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41634456 41634586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (399 nt):
ATGAGGGCGGAGGGCGCCGACCACTCGATGATCAACCTGTCGGTGCAGCAGGTCCTGAGCCTCTGGGCCC
ATGGCACGGTGCTGAGGAACCTCACGGAGATGTGGTACTGGATCTTCCTCTGGGCTCTCTTCTCCTCTCT
GTTTGTCCACGGTGCTGCAGGCGTGCTGATGTTTGTGATGCTGCAGAGGCACAGGCAGGGGAGAGTGATC
TCCATCATTGCTGTCAGCATCGGGTTTCTGGCTTCTGTAACTGGAGCAATGATTACTAGTGCAGCAGTGG
CCGGCATCTACAGAGTGGCTGGGAAGAACATGGCCCCGCTGGAAGCCCTGGTGTGGGGCGTGGGGCAGAC
TGTGCTGACACTCATCATCTCCTTTTCAAGGATCCTCGCCACACTCTGA

Translation (132 aa):
MRAEGADHSMINLSVQQVLSLWAHGTVLRNLTEMWYWIFLWALFSSLFVHGAAGVLMFVMLQRHRQGRVI
SIIAVSIGFLASVTGAMITSAAVAGIYRVAGKNMAPLEALVWGVGQTVLTLIISFSRILATL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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