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Report for CCDS49267.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49267.1 Public Mus musculus 13 Rnf44 23 108 98 CCDS HistoryNCBI Gene:105239Re-query CCDS DB by CCDS ID:49267.1Re-query CCDS DB by GeneID:105239See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49267.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000134862.7 ENSMUSP00000114259.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000134862.7Link to Ensembl Protein Viewer:ENSMUSP00000114259.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000134862Re-query CCDS DB by Protein ID:ENSMUSP00000114259
Original member Current member EBI ENSMUST00000150806.7 ENSMUSP00000123198.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150806.7Link to Ensembl Protein Viewer:ENSMUSP00000123198.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000150806Re-query CCDS DB by Protein ID:ENSMUSP00000123198
Original member Current member NCBI NM_001146027.1 NP_001139499.1 Accepted alive Link to Nucleotide Sequence:NM_001146027.1Link to Protein Sequence:NP_001139499.1Re-query CCDS DB by Nucleotide ID:NM_001146027Re-query CCDS DB by Protein ID:NP_001139499Link to BLAST:NP_001139499.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139499.1 351 Q3UHJ8-3 351 100% 0 0

Chromosomal Locations for CCDS 49267.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 54681749 54681811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54681934 54682033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54682113 54682234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54682327 54682414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54682580 54682701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54682789 54682950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54683043 54683219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54683595 54683762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54683961 54684014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGCTGCACCCAGCCACCCAGCAGAGCCCGTTCATGGTTGATCTCCACGAACAAGTGCACCAGGGACCTG
TCCCTCTGTCCTACACGGTCACCACAGTGACAACCCAAGGCTTCCCTTTGCCTACAAGCCAACACATCCC
TGGCTGCAGTGCCCAGCAGCTCCCAGCATGCTCCGTGATGTTCAGTGGGCAGCACTACCCCCTCTGCTGC
CTCCCACCTCCGCAGCTGATCCAGGCGTGCACCATGCAGCAGCTCCCTGGGCCCTACCACACCTACCCCC
ACCTCATCTCCAGTGACCACTACATCCTTCACCCACCACCGCCAGCCCCACCGCCCCAGCCTACCCACAT
GGCACCGCTTGGGCAGTTTGTGTCCCTGCAGACCCAGCACCCACGTATGCCCCTGCAGCGGCTGGATAAC
GAGATGGACCTTCGAGGAGACCAGCACCCCTTGGGTAGCTTCACTTACTCCACCTCTGCCACTGGCCCAG
CCTTGTCGCCCTCAGTGCCCCTTCACTACCTACCCCATGATCCACTGCACCAGGAGCTGTCCTTTGGTGT
GCCATATTCCCACATGATGCCACGAAGACTGAGCACACAGAGATACCGCCTGCAACAGCCGCTGCCACCA
CCCCCACCGCCGCCGCCACCATCTTACTACCCAAGCTTCCTACCCTACTTCCTTTCAATGCTGCCAATGT
CACCGACCACCGTGGGCCCCACCATCAGCTTGGACCTGGACGTGGATGACGTAGAGATGGAGAACTATGA
GGCTCTCCTGAACCTGGCTGAGCGGCTGGGAGACGCCAAGCCCCGGGGCCTCACCAAAGCAGACATCGAA
CAACTGCCGTCGTATCGCTTTAACCCTGACAGCCATCAGTCTGAGCAGACTCTGTGTGTGGTCTGCTTCA
GTGACTTCGAGGTGCGGCAACTGCTCCGAGTCCTCCCCTGCAACCACGAGTTCCATGCCAAGTGTGTTGA
CAAGTGGTTGAAGGCCAACCGGACCTGTCCCATTTGCCGGGCGGATGCCTCCGAGGTGCCCAGGGAGGCC
GAGTGA

Translation (351 aa):
MLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLCC
LPPPQLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDN
EMDLRGDQHPLGSFTYSTSATGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPP
PPPPPPPSYYPSFLPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIE
QLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREA
E


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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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