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Report for CCDS49268.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49268.1 Public Mus musculus 13 Rnf44 23 108 98 CCDS HistoryNCBI Gene:105239Re-query CCDS DB by CCDS ID:49268.1Re-query CCDS DB by GeneID:105239See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49268.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000125871.7 ENSMUSP00000118474.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000125871.7Link to Ensembl Protein Viewer:ENSMUSP00000118474.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000125871Re-query CCDS DB by Protein ID:ENSMUSP00000118474
Original member Current member NCBI NM_001146025.1 NP_001139497.1 Accepted alive Link to Nucleotide Sequence:NM_001146025.1Link to Protein Sequence:NP_001139497.1Re-query CCDS DB by Nucleotide ID:NM_001146025Re-query CCDS DB by Protein ID:NP_001139497Link to BLAST:NP_001139497.1

Chromosomal Locations for CCDS 49268.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 54681749 54681811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54681934 54682033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54682113 54682234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54682327 54682414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54682580 54682701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54682789 54682950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54683043 54683219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54683595 54683762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54683961 54684150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54684338 54684444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGAGACCATGGACTTTGGCAGTGACTAAGTGGCCACCTTCTGCCCCTGTGGGTCACTGGCGAGTCTCTA
CAAGGCTTAGCAGCAGTCCAGGCCAGCTCTGGGGAAGCCTTGGCCACGAGGGGCCCCTGGTCAGCCCACC
TGCCCAGGATGAGCGCTTACCCTCCCAGCAGCTGCTGCCCAGACCATCAAACCTCTCTGTAGAGGAGCAC
CGAGCCTCAGCTCCTGCCGGCAGGAGCCCCCGAATGCTGCACCCAGCCACCCAGCAGAGCCCGTTCATGG
TTGATCTCCACGAACAAGTGCACCAGGGACCTGTCCCTCTGTCCTACACGGTCACCACAGTGACAACCCA
AGGCTTCCCTTTGCCTACAAGCCAACACATCCCTGGCTGCAGTGCCCAGCAGCTCCCAGCATGCTCCGTG
ATGTTCAGTGGGCAGCACTACCCCCTCTGCTGCCTCCCACCTCCGCAGCTGATCCAGGCGTGCACCATGC
AGCAGCTCCCTGGGCCCTACCACACCTACCCCCACCTCATCTCCAGTGACCACTACATCCTTCACCCACC
ACCGCCAGCCCCACCGCCCCAGCCTACCCACATGGCACCGCTTGGGCAGTTTGTGTCCCTGCAGACCCAG
CACCCACGTATGCCCCTGCAGCGGCTGGATAACGAGATGGACCTTCGAGGAGACCAGCACCCCTTGGGTA
GCTTCACTTACTCCACCTCTGCCACTGGCCCAGCCTTGTCGCCCTCAGTGCCCCTTCACTACCTACCCCA
TGATCCACTGCACCAGGAGCTGTCCTTTGGTGTGCCATATTCCCACATGATGCCACGAAGACTGAGCACA
CAGAGATACCGCCTGCAACAGCCGCTGCCACCACCCCCACCGCCGCCGCCACCATCTTACTACCCAAGCT
TCCTACCCTACTTCCTTTCAATGCTGCCAATGTCACCGACCACCGTGGGCCCCACCATCAGCTTGGACCT
GGACGTGGATGACGTAGAGATGGAGAACTATGAGGCTCTCCTGAACCTGGCTGAGCGGCTGGGAGACGCC
AAGCCCCGGGGCCTCACCAAAGCAGACATCGAACAACTGCCGTCGTATCGCTTTAACCCTGACAGCCATC
AGTCTGAGCAGACTCTGTGTGTGGTCTGCTTCAGTGACTTCGAGGTGCGGCAACTGCTCCGAGTCCTCCC
CTGCAACCACGAGTTCCATGCCAAGTGTGTTGACAAGTGGTTGAAGGCCAACCGGACCTGTCCCATTTGC
CGGGCGGATGCCTCCGAGGTGCCCAGGGAGGCCGAGTGA

Translation (432 aa):
MRPWTLAVTKWPPSAPVGHWRVSTRLSSSPGQLWGSLGHEGPLVSPPAQDERLPSQQLLPRPSNLSVEEH
RASAPAGRSPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSV
MFSGQHYPLCCLPPPQLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQ
HPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLST
QRYRLQQPLPPPPPPPPPSYYPSFLPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDA
KPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPIC
RADASEVPREAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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