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Report for CCDS49396.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49396.1 Public Mus musculus 14 Gm10406 23 108 98 CCDS HistoryNCBI Gene:100038847Re-query CCDS DB by CCDS ID:49396.1Re-query CCDS DB by GeneID:100038847See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49396.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100895.9 ENSMUSP00000098455.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100895.9Link to Ensembl Protein Viewer:ENSMUSP00000098455.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100895Re-query CCDS DB by Protein ID:ENSMUSP00000098455
Original member Current member EBI ENSMUST00000170738.2 ENSMUSP00000130661.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170738.2Link to Ensembl Protein Viewer:ENSMUSP00000130661.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000170738Re-query CCDS DB by Protein ID:ENSMUSP00000130661
Original member Current member NCBI NM_001164727.1 NP_001158199.1 Accepted alive Link to Nucleotide Sequence:NM_001164727.1Link to Protein Sequence:NP_001158199.1Re-query CCDS DB by Nucleotide ID:NM_001164727Re-query CCDS DB by Protein ID:NP_001158199Link to BLAST:NP_001158199.1

Chromosomal Locations for CCDS 49396.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 7007248 7007257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 7009801 7009983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 7010660 7010791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 7011742 7011904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 7012637 7012766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGTTTTCCTGGCTGCTCAGGCTATTTCAGAAAGAGAATGGCGATGAAGGAGAGACCAGACCAACAGAGA
AGGAAGAGGGAATCCTTTCTCATGAAAAAGGAAGAAGGAAATCATTCTGGAGAAGGCACAGGTCTGCTAG
AAATACTTCAACCCAAAATTCCAAAATGACTAAGAAGAGATCAAAAATAAATGAACTAGAAGAACTGAAA
TTGGATATGAGGAAGATCAGCAATGACATGGAGGAAATGTGTGGAATCCTGAACCTTTACATGTATGAGG
ATTTGAACTACAGGATGAACACTGAATTCAACATCATTAAATCACAACATGAGAAGACAATGTTGGATAT
GAATAAAATGATCCAGTCCATAATTGGTTCCATGCAGTACTCCAAGGAACTGATAGAAGATAACTATTCC
TACAGCATTAAGGAGGACCACCTCCTCCGTGAGTGCACTCAACTCAACGAAAACGTAAGGATATTACTGA
ATGAGAACAGAAGGCTGCTGGTGGAGCAGGCTGGCTATAAGTGTCCTGTGGGGAAGAAAAGAGGTTCTCT
GAGGAGGCCAGCAAGAACATCTGTGTCCCAAGTGCCAAGGAACAGCAGTGTGAAATAG

Translation (205 aa):
MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKINELEELK
LDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYS
YSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGYKCPVGKKRGSLRRPARTSVSQVPRNSSVK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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