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Report for CCDS49506.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49506.1 Public Mus musculus 14 Zmym2 23 108 98 CCDS HistoryNCBI Gene:76007Re-query CCDS DB by CCDS ID:49506.1Re-query CCDS DB by GeneID:76007See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49506.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022511.9 ENSMUSP00000022511.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022511.9Link to Ensembl Protein Viewer:ENSMUSP00000022511.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022511Re-query CCDS DB by Protein ID:ENSMUSP00000022511
Original member Current member NCBI NM_001360643.1 NP_001347572.1 Accepted alive Link to Nucleotide Sequence:NM_001360643.1Link to Protein Sequence:NP_001347572.1Re-query CCDS DB by Nucleotide ID:NM_001360643Re-query CCDS DB by Protein ID:NP_001347572Link to BLAST:NP_001347572.1
Original member Current member NCBI NM_029498.4 NP_083774.2 Accepted alive Link to Nucleotide Sequence:NM_029498.4Link to Protein Sequence:NP_083774.2Re-query CCDS DB by Nucleotide ID:NM_029498Re-query CCDS DB by Protein ID:NP_083774Link to BLAST:NP_083774.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347572.1 1376 Q9CU65 1376 100% 0 0
NP_083774.2 1376 Q9CU65 1376 100% 0 0

Chromosomal Locations for CCDS 49506.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 56902706 56903552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56911078 56911360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56912952 56913117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56913956 56914168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56919271 56919342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56920587 56920737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56921502 56921617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56925841 56925957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56928187 56928337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56932089 56932261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56937510 56937675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56938405 56938439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56941998 56942127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56943253 56943368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56944066 56944237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56946491 56946616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56947947 56948041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56949510 56949678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56950177 56950328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56956180 56956294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56956852 56957103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56958182 56958302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56959715 56959907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4131 nt):
ATGGACACAAGTTCAGTGGGAACGTTAGAACTGACTGATCAAACTCCTGTCTTATTAGGAAGTACAGCCA
TGGCAACTAGTCTCACGAACGTAGGAAATTCATTTAGTGGCCCACCTAATCCTTTAGTGTCTAGATCTAG
TAAGTTTCAGAACTCATCAGTAGAAGATGATGATGACGTTGTTTTTATTGAACCTGTACAACCTCCTCCA
TCTTCTGCACCTTTGGTTGCTGATCAAAGACCCATAACATTTACATCTTCAAAAAATGAAGAACTACAAG
GAAACGATCCCAAAATTCTTCCTTCATCGAAAGAGTTGGCCCCGCAAAAGGGCAGTGTAAGCGAGACAAT
TGTTATTGATGATGAAGAGGACATGGAAACAAATCAAGGACAAGAGAAGAGTTCCTCAAATTTTATTGAA
AGGAGACCTTCTGAAACTAAAAACAGAACTAATGATGTGGATTTCTCCAGTTCCACTTTTTCAAGAAGTA
AAGTAAACGCAGGAGTGAGTAACAGTGGTATTACCACAGAGCCAGACTCGGAGATTCAGATTGCTAATGT
TACAACCTTAGAAACAGGCGTAAGCTCTGTGAGTGATGGCCAGCTAGAAAGTACTGATGGGAGAGATATG
AACTTAATGATTACTCATGTCACATCACTGCACAACACCAGCCTGGGAGATGGCTCCAACGGACTTCAGT
CCAGTAACTTTGGTGTGAATATACAAACGTACACCCCATCTCTAACGTCACAGACCAAGGCTGGAGTTGG
ACCTTTTAATCCTGGTAGGATGAATGTTGCAGGAGATGTATTTCAGAATGGAGAGTCTGCACCTCATCAC
AATCCTGATTCTTGGATCTCCCAGTCAGCATCATTTCCTCGTAACCAGAAACAACAAGGGGTGGATTCTT
TATCACCAGTGGCCTCACTTCCTAAACAGATATTCCAGCCCTCGAACCAACAACCCACTAAACCAGTTAA
AGTCACTTGTGCAAACTGCAAAAAACCTCTACAGAAGGGGCAGACAGCTTACCAACGCAAAGGATCAGCT
CACCTCTTCTGTTCAACCACCTGCCTTTCTTCTTTCTCCCATAAGCCTGCTCCAAAGAAACTCTGTGTTA
TGTGTAAAAAAGATATAACTACAATGAAGGGAACCATTGTTGCTCAAGTGGACTCAAGTGAGTCCTTCCA
AGAATTTTGTAGTACATCTTGTTTGTCTCTCTATGAGGACAAACAGAGTCCTGCTAAAGGAGCTCTAAAT
AAATCAAGATGCACAATCTGTGGCAAATTAACTGAGATTCGCCATGAAGTTAGTTTTAAAAACATGACTC
ATAAGCTGTGCAGTGACCACTGCTTTAACAGATACCGAATGGCCAATGGTCTGATAATGAATTGCTGTGA
GCAGTGCGGAGAATATTTGCCCAGTAAAGGTGCTGGGAATAATGTTCTGGTGGTTGATGGTCAGCAGAAG
AGATTTTGTTGTCAGAGTTGTGTCACTGAATACAAACAGGTAGGTAGCCATCCAAGCTTCCTGAAGGAAG
TTCGGGATCACATGCAGGACTCTTTCTTAATGCAGCCTGAGAAATATGGAAAACTGACAACTTGTACTGG
TTGCCGAACACAGTGCAGGTTTTTTGATATGACTCAGTGCATAGGTCCTAATGGATATATGGAGCCATAT
TGTTCAACTGCTTGCATGAACAGTCACAAGACAAAATATGCAAAATCACAAAGTTTGGGAATTATTTGCC
ATTTTTGTAAGCGAAACTCTTTACCTCAATACCAAGCCACAATGCCTGATGGAAAACTGTATAACTTTTG
CAATTCCAGTTGTGTGGCTAAATTTCAGGCTCTAAGCATGCAGTCATCTCCAAATGGCCAGTTTGTAGCA
CCCAGTGATATTCAGCTGAAATGCAACTACTGTAAAAATTCCTTTTGTTCAAAACCAGAAATCTTGGAAT
GGGAGAACAAAGTGCATCAGTTCTGCAGCAAAACTTGCTCAGATGACTATAAGAAGTTGCATTGCATAGT
TACATATTGCGAATACTGCCAAGAGGAGAAGACTCTGCATGAAACAGTAAATTTCTCTGGCGTTAAGAGA
CCTTTCTGTAGTGAAGGCTGCAAGCTATTATACAAACAAGATTTTGCAAGACGATTAGGATTAAGATGTG
TTACCTGCAACTATTGTTCTCAGCTGTGTAAGAAGGGAGCCACTAAAGAACTTGATGGAGTTGTCAGAGA
CTTCTGCAGTGAAGACTGCTGTAAGAAATTCCAGGAGTGGTACTACAAGGCTGCGAGGTGTGACTGCTGT
AAATCCCAAGGCACTCTGAAAGAGCGAGTGCAGTGGCGTGGCGAAATGAAACATTTCTGTGATCAGCACT
GCTTACTACGTTTCTATTGTCAGCAAAATGAGCCCAACATGACAACTCAGAAAGGACCTGAAAACCTACA
TTATGATCAGGGCTGTCAGACGTCCCGAACCAAAATGACAGGCTCAGCACCACCCCCTTCTCCTACACCA
AACAAAGAGATGAAGAATAAAGCAATTCTTTGCAAACCTTTAACAATGACAAAAGCAACTTACTGTAAGC
CTCACATGCAGACCAAATCTTGTCAGACAGATGAGAATTGGAAGACAGAGTATGTCCCAGTGCCTATTCC
TGTCCCTGTGTATGTCCCTGTGCCTATGCACATGTACAGCCAGAATATTCCTGTTCCGACCACAGTTCCT
GTTCCTGTGCCCGTTCCTGTGTTTCTGCCTGCTCCATTGGACAGCAGTGAGAAGATTCCTGCCACAGTTG
AGGACCTCAAAAGCAAAGTTTCTTCAGATCCTCTTGATTCAGAATTGCTTACGATGACAGATATGATGAC
TGAAGAGGAGGGGAAAGCAGAGGCATCCAACATCAATAGTGTAATTATTGAGACAGACATAATTGGCTCA
GATCTTACAAAGAACTCTGACCCAGATATACAATCCAACATGCCCGATGTACCATATGAACCAGATTTGG
ATATTGAAATAGATTTCCCCAGAGCTGCAGAGGAGCTTGATATGGAAAATGAGTTTTTATTACCACCTGT
TTTTGGAGAAGAATACGAGGAGCAGCCCAGACCTCGATCTAAAAAAAAGGGAACCAAGAGGAAGGCTGTA
TCAGGATACCAGTCTCATGATGATAGTTCTGACAATTCAGAATGCAGCTTTCCTTTCAAGTATACATACG
GTGTAAATGCGTGGAAACATTGGGTCAAAACTAGGCAACTTGATGAAGATCTTCTGGTATTAGATGAGCT
AAAATCCTCTAAATCAGTAAAGTTAAAAGAAGATCTACTCTCTCATACCACAGCTGAGCTTAACTATGGG
TTAGCCCATTTTGTCAATGAGATCAGACGACCAAATGGAGAGAATTATGCACCTGACAGCATCTATTATC
TATGCCTTGGTATACAGGAGTACTTATGTGGTAGTAATCGAAAGGACAACATATTTATTGATCCAGGATA
CCAGATGTTTGAGCAAGAACTGAATAAAATACTCCGAAGTTGGCAACCAAGCATACTTCCAGATGGGTCA
ATTTTCTCTCGAGTTGAAGAAGACTATCTCTGGAGGATAAAACAACTAGGATCCCACTCTCCAGTAGCAC
TTTTGAATACCCTATTCTACTTTAACACTAAGTATTTTGGCCTGAAAACAGTGGAACAACACTTAAGACT
TTCCTTTGGCACTGTGTTTAGGCATTGGAAAAAAAATCCTTTAACAATGGAAAATAAAGCATGTCTTCGC
TATCAGGTGTCTTCCTTATGTGGAACAGACAATGAAGATAAAATTGCTACTGGAAAACGAAAACATGAAG
ATGATGAGCCAGTATTTGAACAAGTTGAAAACACAGCCAACCCTTCTAGATGTCCTGTGAAAATGTTTGA
ATGCTACTTGTCTAAAAGTCCACAGAACCTTAATCAGAGAATGGATGTTTTTTATTTACAACCAGAATGT
TCTAGTTCTACAGATAGCCCTGTCTGGTACACATCTACTTCCCTGGACCGGAACACCTTGGAAAATATGC
TTGTACGGGTTCTTCTAGTAAAAGATATTTATGATAAAGACAATTATGAACTGGATGAAGACACAGACTA
A

Translation (1376 aa):
MDTSSVGTLELTDQTPVLLGSTAMATSLTNVGNSFSGPPNPLVSRSSKFQNSSVEDDDDVVFIEPVQPPP
SSAPLVADQRPITFTSSKNEELQGNDPKILPSSKELAPQKGSVSETIVIDDEEDMETNQGQEKSSSNFIE
RRPSETKNRTNDVDFSSSTFSRSKVNAGVSNSGITTEPDSEIQIANVTTLETGVSSVSDGQLESTDGRDM
NLMITHVTSLHNTSLGDGSNGLQSSNFGVNIQTYTPSLTSQTKAGVGPFNPGRMNVAGDVFQNGESAPHH
NPDSWISQSASFPRNQKQQGVDSLSPVASLPKQIFQPSNQQPTKPVKVTCANCKKPLQKGQTAYQRKGSA
HLFCSTTCLSSFSHKPAPKKLCVMCKKDITTMKGTIVAQVDSSESFQEFCSTSCLSLYEDKQSPAKGALN
KSRCTICGKLTEIRHEVSFKNMTHKLCSDHCFNRYRMANGLIMNCCEQCGEYLPSKGAGNNVLVVDGQQK
RFCCQSCVTEYKQVGSHPSFLKEVRDHMQDSFLMQPEKYGKLTTCTGCRTQCRFFDMTQCIGPNGYMEPY
CSTACMNSHKTKYAKSQSLGIICHFCKRNSLPQYQATMPDGKLYNFCNSSCVAKFQALSMQSSPNGQFVA
PSDIQLKCNYCKNSFCSKPEILEWENKVHQFCSKTCSDDYKKLHCIVTYCEYCQEEKTLHETVNFSGVKR
PFCSEGCKLLYKQDFARRLGLRCVTCNYCSQLCKKGATKELDGVVRDFCSEDCCKKFQEWYYKAARCDCC
KSQGTLKERVQWRGEMKHFCDQHCLLRFYCQQNEPNMTTQKGPENLHYDQGCQTSRTKMTGSAPPPSPTP
NKEMKNKAILCKPLTMTKATYCKPHMQTKSCQTDENWKTEYVPVPIPVPVYVPVPMHMYSQNIPVPTTVP
VPVPVPVFLPAPLDSSEKIPATVEDLKSKVSSDPLDSELLTMTDMMTEEEGKAEASNINSVIIETDIIGS
DLTKNSDPDIQSNMPDVPYEPDLDIEIDFPRAAEELDMENEFLLPPVFGEEYEEQPRPRSKKKGTKRKAV
SGYQSHDDSSDNSECSFPFKYTYGVNAWKHWVKTRQLDEDLLVLDELKSSKSVKLKEDLLSHTTAELNYG
LAHFVNEIRRPNGENYAPDSIYYLCLGIQEYLCGSNRKDNIFIDPGYQMFEQELNKILRSWQPSILPDGS
IFSRVEEDYLWRIKQLGSHSPVALLNTLFYFNTKYFGLKTVEQHLRLSFGTVFRHWKKNPLTMENKACLR
YQVSSLCGTDNEDKIATGKRKHEDDEPVFEQVENTANPSRCPVKMFECYLSKSPQNLNQRMDVFYLQPEC
SSSTDSPVWYTSTSLDRNTLENMLVRVLLVKDIYDKDNYELDEDTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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