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Report for CCDS49517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49517.1 Public Mus musculus 14 Mipep 23 108 98 CCDS HistoryNCBI Gene:70478Re-query CCDS DB by CCDS ID:49517.1Re-query CCDS DB by GeneID:70478See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49517.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063562.8 ENSMUSP00000069840.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063562.8Link to Ensembl Protein Viewer:ENSMUSP00000069840.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000063562Re-query CCDS DB by Protein ID:ENSMUSP00000069840
Original member Current member EBI ENSMUST00000224635.1 ENSMUSP00000153502.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224635.1Link to Ensembl Protein Viewer:ENSMUSP00000153502.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224635Re-query CCDS DB by Protein ID:ENSMUSP00000153502
Original member Current member NCBI NM_027436.3 NP_081712.2 Accepted alive Link to Nucleotide Sequence:NM_027436.3Link to Protein Sequence:NP_081712.2Re-query CCDS DB by Nucleotide ID:NM_027436Re-query CCDS DB by Protein ID:NP_081712Link to BLAST:NP_081712.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081712.2 711 A6H611 711 100% 0 0

Chromosomal Locations for CCDS 49517.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 60784688 60784870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60787295 60787468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60788154 60788242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60790887 60790973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60796172 60796235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60802121 60802303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60802813 60802969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60808968 60809016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60811099 60811159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60814953 60815005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60827299 60827452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60829387 60829464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60831113 60831317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60833985 60834094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60843208 60843282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60846384 60846503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60872018 60872139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60875234 60875307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60903368 60903465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2136 nt):
ATGCTGCTGGCGGCCGGGGCACGGTACGCCCGCCGGCTGTGCGGCCGGGGAGCCGCGGCGGCTCTGCAGG
GACGCACAGGCCGGAGCTGCGCCCGGGACGTCAGTACTAGCTGGTCCCCGGTGGGCGCCGCCTTCAACGT
CAAGCCCCAGAGCCACCTATGGAACCTGTTGGGGGAGCGCCGGGGTCTTTTTGGAGTTCCTGAGCTCAGC
ACCCCTGAAGGATTCCAAGTTGCCCAAGAGGAAGCCTTGAAGAAGACGGAGTGGCTGGTAGAGCGAGCAT
GTTCCACACCCCCAGGGCCACAGACAGTCCTCATTTTTGACGAACTCTCGGATTGCCTGTGCAGAGTGGC
TGACTTGGCGGACTTTGTGAAAATTGGACACCCAGACCCTGCATTCAGAGAGGCTGCGCAAGAGGCCTGC
AGAAGTATTGGCACCATGGTGGAAAAGTTGAATACAAACGTGGAGCTGTATCAGAGTCTGCAAAGGTTAC
TGGGTGATAAGAAGCTTATGGAGTCCCTTGATGCGGAAACCAGGCGAGTGGCCGAACTATTTATGTTTGA
TTTTGAAATCAGTGGAATCCATCTAGATGAAGAAAAGCGCAGAAGAGCAGTGGACCTCAATGTTAAGATC
TTGGACTTGAGCAATGCTTTCCTCATGAGAACCAACTTTCCCAACAAGATCCGGAAGAGTCTCTTACCAG
AGCACATTCAGCACCACTTTGCCCGTGACGGAAGCCACTTAATCATTGACGGCCTGCATGCAGAAGCCTC
CGATGACTTGGTTCGGGAGGCTGCTTATAAAATTTTCCTTTATCCCAATGCCGATCAGTTGAAATGTTTA
GAGGAATTGCTAAGCAGCAGAGACCTTCTGGCAAAATTAGTAGGTTATTCTACATTTTCCCACAGGGCCC
TCCAAGGAACCATAGCTCAGACTCCAGAGACTGTCATGCAGTTCCTTGAGAAGCTATCTGAAAAGCTCTC
TGAAAGAACTAGAAAAGATTTCAAGATGATGCAAGGAATGAAAACAAAACTAAATCCTCAAAATTCTAAA
CTAATGCCTTGGGACCCTCCCTACTACAGCGGTGTGATTCGTGCAGAGAGGTATAATATTGAGCCCAGTT
TATACTGCCCGTTTTTATCCCTTGGAGCTTGCATGGAAGGCCTGAATGTCTTATTTAACAAACTGCTGGG
CATCACCTTATATGCAGAGCAGACCTTCAAAGGAGAGGTGTGGTGTAATGACATCCGGAAGCTGGCTGTT
GTTCATGAATCTGAAGGGCTGCTGGGGTACATTTACTGTGATTTTTTCCAGAGAGCAAACAAGCCACAGC
AGGATTGCCACTTCACCATCCGAGGAGGCAGATTAAAGGAAGATGGCAGCTATCAGCTTCCAGTGGTCGT
TCTCATGCTGAATCTTCCTCATGCTTCCAGGGATTTCCCTACATTATTAACTCCAGGAATGATGGAAAAT
CTCTTCCATGAAATGGGCCATGCCATGCATTCAATGCTTGGACGAACTCGGTACCAACATGTCACTGGGA
CCAGGTGCCCTACTGACTTTGCTGAAGTTCCATCTATTCTGATGGAGTACTTTTCAAATGATTACCGAGT
AGTCAGCCAGTTCGCCAAGCATTATCAGACTGGTCAGCCACTCCCGAAAGCTATGGTGTCTCGTCTCTGT
GAGTCTAAGAAGGTTTGCACAGCAGCAGAAATGCAGCTTCAGGTCTTTTATGCCGCCCTGGATCAAATCT
ACCATGGCCAGCATCCCCTGAAGAAGTCAACCACAGATATCCTCATGGAAACACAAGAGCAGTTCTATGG
CTTGCCCTATGTTCCTGACACTGCCTGGCAGCTGAGGTTCAGCCACCTCGTGGGATATGGTGCCAAGTAT
TACTCATACCTGATGTCCAGGGCTGTGGCATCCATGATCTGGAAGGAGTGCTTCCTACAGGATCCTTTTA
ACAGGGCCGCTGGGGAACGCTACCGCAGAGAGATGTTGGCCCATGGTGGAGGCAAGGAGCCCATGCTTAT
GATTCAAGGCATGCTGCAGAAGTGTCCTTCCATCGATGACTTTGTGGATGCCCTCGTGTCTGACATGAAT
CTGGACTTTGAAACGTTCTTCCTGGATTCTAAATAG

Translation (711 aa):
MLLAAGARYARRLCGRGAAAALQGRTGRSCARDVSTSWSPVGAAFNVKPQSHLWNLLGERRGLFGVPELS
TPEGFQVAQEEALKKTEWLVERACSTPPGPQTVLIFDELSDCLCRVADLADFVKIGHPDPAFREAAQEAC
RSIGTMVEKLNTNVELYQSLQRLLGDKKLMESLDAETRRVAELFMFDFEISGIHLDEEKRRRAVDLNVKI
LDLSNAFLMRTNFPNKIRKSLLPEHIQHHFARDGSHLIIDGLHAEASDDLVREAAYKIFLYPNADQLKCL
EELLSSRDLLAKLVGYSTFSHRALQGTIAQTPETVMQFLEKLSEKLSERTRKDFKMMQGMKTKLNPQNSK
LMPWDPPYYSGVIRAERYNIEPSLYCPFLSLGACMEGLNVLFNKLLGITLYAEQTFKGEVWCNDIRKLAV
VHESEGLLGYIYCDFFQRANKPQQDCHFTIRGGRLKEDGSYQLPVVVLMLNLPHASRDFPTLLTPGMMEN
LFHEMGHAMHSMLGRTRYQHVTGTRCPTDFAEVPSILMEYFSNDYRVVSQFAKHYQTGQPLPKAMVSRLC
ESKKVCTAAEMQLQVFYAALDQIYHGQHPLKKSTTDILMETQEQFYGLPYVPDTAWQLRFSHLVGYGAKY
YSYLMSRAVASMIWKECFLQDPFNRAAGERYRREMLAHGGGKEPMLMIQGMLQKCPSIDDFVDALVSDMN
LDFETFFLDSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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