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Report for CCDS49524.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49524.1 Public Mus musculus 14 Scara3 23 108 98 CCDS HistoryNCBI Gene:219151Re-query CCDS DB by CCDS ID:49524.1Re-query CCDS DB by GeneID:219151See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49524.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042046.4 ENSMUSP00000046525.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042046.4Link to Ensembl Protein Viewer:ENSMUSP00000046525.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000042046Re-query CCDS DB by Protein ID:ENSMUSP00000046525
Original member Current member NCBI NM_172604.3 NP_766192.1 Accepted alive Link to Nucleotide Sequence:NM_172604.3Link to Protein Sequence:NP_766192.1Re-query CCDS DB by Nucleotide ID:NM_172604Re-query CCDS DB by Protein ID:NP_766192Link to BLAST:NP_766192.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766192.1 606 Q8C850 606 100% 0 0

Chromosomal Locations for CCDS 49524.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 65920737 65921188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65930798 65931841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65933104 65933202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65936363 65936482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65938211 65938309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65953496 65953502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1821 nt):
ATGAAAGTGAGATCAGCTGGCAGTGACAGGGATGTACTGTGTGTCACTGAAGAGGACCTGGCTGGTGAAG
ACGAGGACATGCCATCCTTCCCATGCACCCAAGAGGGCCGGGCAGGACCCCGCTGCAACCGCTGCCAGAA
GAACCTATCTTTGCACACATCAGTGCGGATTTTGTACCTCTTCCTCACTCTGCTCCTGGTGGCCGTGGCT
GTGCTGGCCTCTCTGGTTTTTAGAAAGGTGGACTCTCTCTCAGAAGATATCTCCTTGGCCCAGTCCATCT
ATAATAAGAAGCTTGTGTCAATGCAAGAAAATCTTCAAGGACTAGACCCAAAAGCCCTGATCAATTGTTC
CTTTTGCCGTGAGGCTGAGCAGCTGGGGCAAGAGATCAGGAAGGTCCAGGAGGAGCTGGAGGGGCTTCAG
AAGATGCTGCTAGCCCAGGAGGTCCAGCTGGACCAGACCTCCCAGACCCATGAGCTGCTCTCCACCAGAA
GCAGTCAAATCTCCCAGGAGATGGGCAGTTGCTCCTTCTCCATTCACCAGGTCAATCAGTCCCTGGGACT
CTTCCTGGCACAGGTGAGGGGCTGGCAGGCCACCACAGCAGGCATGGACATCACCCTGAAGGACCTCACC
CAGGAGTGCTATGATGTCAAGGCTGCTGTACACCAGATCAACTTCACGGTGGGCCAGACTGCTGAGTGGA
TCCACGGGATCCAAAGGAAGACAGATGAGGAGACCCTGACCCTGCAGAAGATAGTCACTGACTGGCAGAA
CTACACCAGACTCTTTGGGGGTCTGCGAACCACCTCTGCCAAGACTGGCGAAATAGTCAAGACCATTCAG
ACCACCCTGGGGGCCTCCTCACAGCGCATTAGCCAGAATTCTGAGAGCATGCATGACTTGGTTCTGCAGG
TCATGGGCCTACAGCTACAGCTGGACAACATCTCTTCCTTTTTGGATGACCATGAGGAGAACATGCATGA
CCTCCAATACCACACCCGATATGCCCAGAATCGCACAGTGGAAAGGTTCGAGTCTCTGGAAGGACGTATG
GCTTCTCATGAGATTGAAATCGGCACTATCTTCACCAATATCAATGCCACCGACAACCACGTGCACAGCA
TGCTCAAGTACCTGGACGACGTGCGGCTGTCTTGCACACTGGGCTTCCACACCCATGCTGAAGAGCTCTA
CTACCTGAATAAATCCGTCTCCCTCATGCTGGGCACCACAGATCTGCTCAGGGAGCGCTTCAGTCTGCTC
AGTGCCCGGTTAGACTTCAATGTCCGAAACCTCTCCATGATCATGGAGGAAATGAAGGCTGTGGACACAC
ACCACGGAGAAATCCTTCGCAATGTCACCGTCATCCGAGGTGTCCCCGGCCCTCCAGGACCAAGAGGACT
CAAAGGAGATACAGGCGTGAAAGGACCTGTTGGTAGCAGAGGACCTAAAGGGGATCCTGGCAATCTGGGA
CCCCCAGGACCTCAGGGTCCTCAGGGGCAGCCTGGGGAGCCAGGACCTGTGGGAGAAAGAGGGCCAGCTG
GCCCCAGAGGCTTTCCAGGCCTCAAAGGCTCAAAGGGCAGCTTTGGCACTGGAGGACCAAGGGGGCAGCC
AGGCCCCAAGGGGGATGTGGGGCCCCTAGGGCCAGAGGGGCCCCCAGGGTCTCCAGGACCTTCAGGGCCT
CAGGGAAAGCCAGGAATTTCAGGAAAGACAGGGTCACCAGGCCAGCGAGGGGCCACAGGGCCTAAGGGTG
AACCAGGCATCCAGGGTCCCCCTGGACTACCTGGACCTCCAGGTCCACCAGGGAACCAGAGCCCCTACTG
A

Translation (606 aa):
MKVRSAGSDRDVLCVTEEDLAGEDEDMPSFPCTQEGRAGPRCNRCQKNLSLHTSVRILYLFLTLLLVAVA
VLASLVFRKVDSLSEDISLAQSIYNKKLVSMQENLQGLDPKALINCSFCREAEQLGQEIRKVQEELEGLQ
KMLLAQEVQLDQTSQTHELLSTRSSQISQEMGSCSFSIHQVNQSLGLFLAQVRGWQATTAGMDITLKDLT
QECYDVKAAVHQINFTVGQTAEWIHGIQRKTDEETLTLQKIVTDWQNYTRLFGGLRTTSAKTGEIVKTIQ
TTLGASSQRISQNSESMHDLVLQVMGLQLQLDNISSFLDDHEENMHDLQYHTRYAQNRTVERFESLEGRM
ASHEIEIGTIFTNINATDNHVHSMLKYLDDVRLSCTLGFHTHAEELYYLNKSVSLMLGTTDLLRERFSLL
SARLDFNVRNLSMIMEEMKAVDTHHGEILRNVTVIRGVPGPPGPRGLKGDTGVKGPVGSRGPKGDPGNLG
PPGPQGPQGQPGEPGPVGERGPAGPRGFPGLKGSKGSFGTGGPRGQPGPKGDVGPLGPEGPPGSPGPSGP
QGKPGISGKTGSPGQRGATGPKGEPGIQGPPGLPGPPGPPGNQSPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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