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Report for CCDS49571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49571.1 Public Mus musculus 15 Ccdc152 23 108 98 CCDS HistoryNCBI Gene:100039139Re-query CCDS DB by CCDS ID:49571.1Re-query CCDS DB by GeneID:100039139See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49571.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165386.1 ENSMUSP00000129305.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165386.1Link to Ensembl Protein Viewer:ENSMUSP00000129305.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165386Re-query CCDS DB by Protein ID:ENSMUSP00000129305
Original member Current member EBI ENSMUST00000226261.1 ENSMUSP00000153730.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226261.1Link to Ensembl Protein Viewer:ENSMUSP00000153730.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226261Re-query CCDS DB by Protein ID:ENSMUSP00000153730
Original member Current member NCBI NM_001166063.3 NP_001159535.1 Accepted alive Link to Nucleotide Sequence:NM_001166063.3Link to Protein Sequence:NP_001159535.1Re-query CCDS DB by Nucleotide ID:NM_001166063Re-query CCDS DB by Protein ID:NP_001159535Link to BLAST:NP_001159535.1

Chromosomal Locations for CCDS 49571.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 3280627 3280749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3281023 3281106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3282818 3282945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3290125 3290227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3292380 3292444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3293853 3293921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3298101 3298206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3301105 3301191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGGATCAAAACAGTGAAGAATGCACGAAGAAGATCAGGACTGTAAATCTTGACAAACTTATAGATGACT
TCTCACAGATAGAAAAGAAAATGATAGAAACTGCTGGAAAGAACAACCTTCTGGATATTCAGCTGGAAAA
GACTAACAGCTTATTAAAAATAATGCAAACAAAAGAAACCTCGATGAAAGAAGAATGTATTATTCTTCAT
ACTATGATAAAAGGGCTACAACAGACTGTTCAATATCAACACAATTTGAAAGATGAAAATGAACAACTAA
AAAGAAATGTTGATTTTATGAAAGAAAAGTTAAAATCTCATGAACAGGAATATAAGAATAAGATTGCCAA
ACTCATAAGTGAAATGAAAATCAAAGAGGAGGAACATAAAACCGAAATGAGCAAACTTTATCTTGATATG
CAGAAAAAAGTTGAACTAAATGAAGAAAAGCACAAAGAACTAATGGCAAGGAAGGAGATGGAAATATCAG
AGTTAAATGCAAAGTTGAGGACTCAGGAGAAGGAAAAGCAAAATGAAATCCTCAGACTGCATCTAGAATT
TGACACTAAACTAGCAAGAGCTCAGACTAAATCAAAATCATATCCGGACACGACTATTTTGCTGCAGAGT
ATCTACAGAAGGAAGCTTCAGCATCTTCAGGAAGAAAAGAGCAAAGAAATTGCAAGTCTGCAGAACACTA
TCCGAGACCTAGAGCAGCGCCTTGCAGCCTGCAAAGATACCCGCCTCATGCGAAGACGGTTTTGA

Translation (254 aa):
MDQNSEECTKKIRTVNLDKLIDDFSQIEKKMIETAGKNNLLDIQLEKTNSLLKIMQTKETSMKEECIILH
TMIKGLQQTVQYQHNLKDENEQLKRNVDFMKEKLKSHEQEYKNKIAKLISEMKIKEEEHKTEMSKLYLDM
QKKVELNEEKHKELMARKEMEISELNAKLRTQEKEKQNEILRLHLEFDTKLARAQTKSKSYPDTTILLQS
IYRRKLQHLQEEKSKEIASLQNTIRDLEQRLAACKDTRLMRRRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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