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Report for CCDS49591.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49591.1 Public Mus musculus 15 Tspyl5 23 108 98 CCDS HistoryNCBI Gene:239364Re-query CCDS DB by CCDS ID:49591.1Re-query CCDS DB by GeneID:239364See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49591.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042021.4 ENSMUSP00000045542.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042021.4Link to Ensembl Protein Viewer:ENSMUSP00000045542.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000042021Re-query CCDS DB by Protein ID:ENSMUSP00000045542
Original member Current member NCBI NM_001085421.1 NP_001078890.1 Accepted alive Link to Nucleotide Sequence:NM_001085421.1Link to Protein Sequence:NP_001078890.1Re-query CCDS DB by Nucleotide ID:NM_001085421Re-query CCDS DB by Protein ID:NP_001078890Link to BLAST:NP_001078890.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078890.1 406 Q69ZB3 406 100% 0 0

Chromosomal Locations for CCDS 49591.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 33686577 33687797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGAGCGGACGGAGTAGGGGTCGAAAGTCTTCCCGCGCCAAAGGCCGGGGCAAAGGCCGGGCCAGAGCCC
GGGTCCGGGCCGCTGCGGAAGACGCCTGGCACGACGAAAAGCCACCACAGAGCCCGCGGCTCGGGGAGGA
CTCCGCGGCCGCGCAGGTGCAGGCCGGCGCAGCTCAAGGAGGCGCCGAACCAGCCGAGCTGCGGGAAGAG
GCGGCCTGCCGCCTCCCGCTGGACTGCGGCCTGGCGTTGCGGGCTCGGGCTGCAGACGAGCGCGGGCTGG
CGGCCCCTGATCCGGACCTGGAGAGGGCCCGTTCCCTCGCCGAGCGCCTGACCAGCGACACCAGCTTCGT
GGGAACCGTGGGAGCCTTGGCGAAGCTGCGACGCGGCTCCCGCATTGGAAATCGGCGAGTCCCCGGGAGG
AAGGCCCCAGATACTCGGAGCGCCACGGGGAGGGGACCTCAGGCCACAGTTAGTGGGAAGCCGAAGATGG
CCTCTGCGGGGTTGTGCGCCGCTGCTCCAGTGGGGGAGGAAAAAAAGATGACAGAGAAGCATGCTGGGGC
AGGGTCTCCCGCGACAGTGGGCAGCATGGATACCCTAGAGACGGTCCAGCTAAAGCTAGAGACCATGAAT
GCACAGGCTGACAGGGCATATCTCAGGCTTTCACGCAAGTTTGGCCAGTTGCGACTTCACCACTTAGAGC
GCCGGAACCTCCTCATCCAGAGCATTCCGGGCTTCTGGGGGCAAGCTTTTCAGAACCATCCCCAGCTGTC
AGCTTTTCTGAATACCAAAGATAAGGAGGTATTGAGCTATTTGAACAGACTGGAGGTGGAAGAACTTGGC
CTTGCCAGGTTGGGCTACAAAATCAAGTTCTACTTTGGCCGAAACCCCTATTTCCAAAACAAGGTGCTCA
TTAAGGAATATGGCTGTGGTCCATCCGGTCAAGTGGTGTCTCGTTCAGCTCCAATCCAGTGGCTCCCAGG
CCATGATCTACAATCCCTAAGCAAGGAAAACCCAGAAAACAATGGTAGCTTCTTTGGGTGGTTTTCAAAT
CACAGCTCTATTGAGTCTGACAAGATTGTTGAGATAATTAATGAGGACCTGTGGCCCAATCCTCTACAGT
ACTACCTGATCAGTGAAGAAGCCCGTGGAGAGAAAGGAAAGGAAGAAAGGCCAGGTCCAGCAAAACTGAG
CCCTGCACCTGCAGTGAGGCAGCCCAACTGA

Translation (406 aa):
MSGRSRGRKSSRAKGRGKGRARARVRAAAEDAWHDEKPPQSPRLGEDSAAAQVQAGAAQGGAEPAELREE
AACRLPLDCGLALRARAADERGLAAPDPDLERARSLAERLTSDTSFVGTVGALAKLRRGSRIGNRRVPGR
KAPDTRSATGRGPQATVSGKPKMASAGLCAAAPVGEEKKMTEKHAGAGSPATVGSMDTLETVQLKLETMN
AQADRAYLRLSRKFGQLRLHHLERRNLLIQSIPGFWGQAFQNHPQLSAFLNTKDKEVLSYLNRLEVEELG
LARLGYKIKFYFGRNPYFQNKVLIKEYGCGPSGQVVSRSAPIQWLPGHDLQSLSKENPENNGSFFGWFSN
HSSIESDKIVEIINEDLWPNPLQYYLISEEARGEKGKEERPGPAKLSPAPAVRQPN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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