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Report for CCDS49800.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49800.1 Public Mus musculus 16 Hrg 23 108 98 CCDS HistoryNCBI Gene:94175Re-query CCDS DB by CCDS ID:49800.1Re-query CCDS DB by GeneID:94175See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49800.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023590.8 ENSMUSP00000023590.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023590.8Link to Ensembl Protein Viewer:ENSMUSP00000023590.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023590Re-query CCDS DB by Protein ID:ENSMUSP00000023590
Original member Current member NCBI NM_053176.2 NP_444406.2 Accepted alive Link to Nucleotide Sequence:NM_053176.2Link to Protein Sequence:NP_444406.2Re-query CCDS DB by Nucleotide ID:NM_053176Re-query CCDS DB by Protein ID:NP_444406Link to BLAST:NP_444406.2

Chromosomal Locations for CCDS 49800.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 22951123 22951338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22953659 22953769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22954446 22954536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22956040 22956206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22957467 22957547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22959161 22959262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22960742 22961584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1611 nt):
ATGGTGGACCACAGTCAAGGATGGTTTAGCACAATGAAGGTGCTCACCACAGCATTGCTTCTAGTCACCC
TGCAGTGTTCCCATGCCCTGAGTCCCACCAACTGTGATGCTTCTGAGCCTCTGGCTGAGAAAGTTCTAGA
CCTGATCAATAAAGGGCGGAGGAGTGGCTATGTTTTCGAGCTGCTGCGGGTCTCTGACGCCCACTTGGAC
AGAGCGGGAACGGCCACAGTCTACTACTTAGCTTTAGATGTGATAGAGTCTGACTGTTGGGTCCTTTCCA
CAAAAGCCCAGGATGACTGTCTTCCATCGAGGTGGCAATCTGAAATAGTGATTGGACAATGTAAGGTAAT
AGCCACAAGATACTCAAATGAGTCTCAAGATCTTAGCGTGAATGGCTATAACTGCACCACAAGTTCTGTC
TCTTCAGCACTTCGCAATACCAAGGACAGTCCTGTACTCTTGGACTTCTTTGAGGATTCCGAGCTCTACA
GAAAGCAAGCCCGTAAAGCCCTGGACAAGTACAAAACGGATAATGGTGACTTTGCCTCTTTCAGAGTGGA
ACGGGCAGAACGGGTTATAAGAGCGAGAGGAGGGGAAAGAACCAATTACTATGTGGAATTCTCCATGAGG
AACTGTTCCACACAGCATTTCCCCAGGTCCCCTCTGGTCTTTGGATTCTGCAGAGCACTTTTGTCCTACA
GTATAGAAACCTCTGACTTGGAAACCCCAGATTCCATTGATATAAACTGCGAAGTCTTCAACATTGAGGA
TCATAAAGACACAAGTGACATGAAACCCCATTGGGGCCATGAGCGTCCTCTTTGTGACAAACATCTGTGT
AAGCTCAGTGGATCCAGGGATCATCATCATACCCATAAGACAGATAAACTTGGATGCCCACCTCCACCAG
AAGGAAAAGATAACTCAGACAGACCACGCCTTCAAGAAGGAGCCCTTCCACAACTGCCCCCTGGCTATCC
CCCTCATTCTGGTGCCAACAGAACCCATAGACCCTCTTATAATCACAGTTGTAATGAGCATCCTTGTCAT
GGACATCGTCCCCATGGACACCACCCCCACAGTCACCATCCCCCCGGTCACCATTCCCATGGTCACCATC
CCCACGGTCACCATCCCCACAGTCACCATTCCCACGGTCACCATCCCCCCGGTCACCATCCCCATGGTCA
CCACCCCCACGGTCACCATCCCCATGGTCACCATCCCCACGGTCACCATCCTCATGGACATGACTTCCTT
GACTATGGACCTTGTGACCCGCCCTCCAATAGTCAAGAACTCAAAGGTCAGTATCATCGGGGCTATGGTC
CACCACATGGACACTCAAGAAAAAGAGGTCCAGGCAAAGGACTCTTTCCTTTCCACCACCAACAAATTGG
ATATGTCTACCGACTCCCTCCACTGAATATAGGTGAAGTTCTCACTCTTCCTGAAGCCAATTTCCCCAGC
TTCTCTTTGCCAAATTGCAACAGATCCCTACAACCAGAGATTCAGCCCTTCCCTCAGACAGCCTCCAGGT
CATGTCCAGGGAAATTTGAGAGTGAATTTCCACAAATTTCCAAGTTTTTTGGATATACACCTCCAAAATA
A

Translation (536 aa):
MVDHSQGWFSTMKVLTTALLLVTLQCSHALSPTNCDASEPLAEKVLDLINKGRRSGYVFELLRVSDAHLD
RAGTATVYYLALDVIESDCWVLSTKAQDDCLPSRWQSEIVIGQCKVIATRYSNESQDLSVNGYNCTTSSV
SSALRNTKDSPVLLDFFEDSELYRKQARKALDKYKTDNGDFASFRVERAERVIRARGGERTNYYVEFSMR
NCSTQHFPRSPLVFGFCRALLSYSIETSDLETPDSIDINCEVFNIEDHKDTSDMKPHWGHERPLCDKHLC
KLSGSRDHHHTHKTDKLGCPPPPEGKDNSDRPRLQEGALPQLPPGYPPHSGANRTHRPSYNHSCNEHPCH
GHRPHGHHPHSHHPPGHHSHGHHPHGHHPHSHHSHGHHPPGHHPHGHHPHGHHPHGHHPHGHHPHGHDFL
DYGPCDPPSNSQELKGQYHRGYGPPHGHSRKRGPGKGLFPFHHQQIGYVYRLPPLNIGEVLTLPEANFPS
FSLPNCNRSLQPEIQPFPQTASRSCPGKFESEFPQISKFFGYTPPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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