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Report for CCDS49816.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49816.1 Public Mus musculus 16 Atp13a4 23 108 98 CCDS HistoryNCBI Gene:224079Re-query CCDS DB by CCDS ID:49816.1Re-query CCDS DB by GeneID:224079See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49816.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000182627.7 ENSMUSP00000138479.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182627.7Link to Ensembl Protein Viewer:ENSMUSP00000138479.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182627Re-query CCDS DB by Protein ID:ENSMUSP00000138479
Original member Current member NCBI NM_001164612.1 NP_001158084.1 Accepted alive Link to Nucleotide Sequence:NM_001164612.1Link to Protein Sequence:NP_001158084.1Re-query CCDS DB by Nucleotide ID:NM_001164612Re-query CCDS DB by Protein ID:NP_001158084Link to BLAST:NP_001158084.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158084.1 1193 Q5XF90-1 1193 99.7485% 0 3

Chromosomal Locations for CCDS 49816.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 29396393 29396593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29403781 29403861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29407541 29407629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29408884 29409077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29409701 29409872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29413729 29413801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29415783 29415879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29417765 29417874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29418542 29418584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29420380 29420459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29421660 29421782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29422587 29422750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29433972 29434096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29440020 29440131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29441155 29441308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29441552 29441638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29449915 29450065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29452571 29452632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29454692 29454880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29455367 29455524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29456548 29456718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29459433 29459567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29469241 29469310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29471889 29472023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29473434 29473503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29475388 29475468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29475558 29475628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29479756 29479902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29490010 29490183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29541244 29541306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3582 nt):
ATGGGTGACCACCTTGAGAAGAGCCAGCATGCTTTACTCAATGAAGGGGACGAGAATGAGATGGAAATAT
TTGGCTATCGGACTCAAGGCTGTCGGAAGGCTCTTTGTCTCATTGGATCCATCTTCTCTCTTGGAATGCT
CCCATTGGTATTTTATTGGAGACCAGCTTGGCGTGTATGGGCAAACTGTGTCCCATGTTCCCTGCAAGAA
GCAGATGTTGTGTTGCTGAAGACAACAGATGAATTCAAAATTTATTCTTGGAAAAAAGTAATATGGATCT
CCCTGTCAGCACTGAGCAGCACATCTGGTCTCACGCCTGACCACCCTCTCATTACAGACGAGGGATACAT
CATAAACAGAGCCATCCGAAAGCCAGATCTAAAGGTGAGATACATAAAAGTGCAGAAAATACGATATGTT
TGGAATAATTTGGAAGGACAGTTTCAGAAAATTGGCTCCCTGGAAGACTGGCTCAGTTCTGCAAAGATAC
ATCAGAAATTTGGATTAGGTCTGACTTCAGAGGAACAAGAGATCAGGAGGTTAATATGTGGGCCTAATGC
TATTGATGTTGAAATCACACCTATTTGGAAACTGCTCATCAAGGAGGTTCTGAATCCATTTTACATCTTT
CAACTCTTCAGCGTCTGTTTGTGGTTCAGTGAAGATTACAAGGAATATGCTCTTGCCATCATCCTCATGT
CTGTCATTTCCATAGCTTTGACCGTGTATGACCTCAGACAGCAATCTGTAAAACTGCACCATCTTGTTGA
ATCCCATAATAGCATTACAGTCTCTGTGTATGAGCGAAAAGCTGGAGCCCAAGACCTGGAATCCCGCCTC
CTGGTGCCTGGAGATTTATTAATTCTGACAGGGAGCAGAGTGCAAATGCCGTGTGACGCCATTCTGATTG
ACGGCAGCTGTGTGGTAGATGAAGGCATGCTGACAGGAGAAAGCATTCCTGTCACTAAAACTCCACTATC
CCAGACAGCTAGTTCTGTGCCCTGGAAGATGCAGTCTGAAGCAGATCCCAGGCGGCATGTTCTCTTCTGT
GGTACGGAGGTGATCCAGGCCAAGGCAGCTGGCTCTGGGGCTGTAAGAGCCGTGGTCCTGCAGACAGGAT
TCAACACTGCAAAGGGGGACCTCGTGAGATCCATCCTGTACCCGAAGCCCATGAACTTCAAGCTCTACAG
GGATGCCATCAGGTTTCTCCTTTGCCTTGTAGGGACAGCCACCATTGGCATGGTCTATACTCTGTGTGTC
TATGTGCTCAGTGGGGAACCTCCGGAGGAGGTGGTAAGGAAAGCCCTGGATGTTATTACCATTGCAGTGC
CTCCCGCTCTCCCTGCTGCCCTGACCACAGGCATCATCTATGCCCAGAGGAGGCTGAAAAAGAAGGGCAT
ATTCTGCATTAGCCCCCAGAGGATCAATGTTTGTGGACAGTTAAACCTTGTCTGCTTCGACAAGACAGGC
ACCTTAACGAGGGGAGGCTTGGATCCTTGGGGAGTTGTACCCTGTGACCAGAATGGATTTCAGGCAGTCC
ACAGTTTTGCCTCAGGCAAAGCTTTGCCTCAGGGTCCACTGTGTGCAGCCATGGCCAGCTGCCACTCTCT
GATTCTCCTTGATGGCACTATTCAGGGAGACCCTCTGGACCTGAAGATGTTTGAAGCCACCAAATGGGAA
ATGACTGCTTCTGGGGATGACTTCCATATCAAGGAAATGCTGGCACACACCATAGTAGTGAAGCCTACAG
ACATGGTGGCCCAGGTCCCAGCGGAAGGACTCGCAATCGTCCATCAGTTCCCATTCTCATCAGCACTACA
GAGGATGACGGTCATCGTCCAGGAGATGGGAGGTGGCCGACTGGCGTTCATGAAAGGTGCACCGGAGAGA
GTGGCCAGCTTTTGCCAACCTGACACAGTACCAACTAGTTTTATTAGTGAACTTCAGATTTACACAACAC
AGGGTTTCCGAGTCATAGCTCTGGCCTACAAGAAGCTGGAAATGGACTGCCCCACAACTGCCTTGATGAG
GGAGAAGGTGGAATCAGACCTGGTATTTCTGGGATTGCTGATCCTGGAGAATCGATTGAAGGAAGAGACC
AAGCCTGTGTTAGAAGAGCTCATCTCTGCCCGGATACGGACTGTCATGATCACAGGTGACAATCTTCAGA
CTGCAATAACAGTGGCTAGGAAGTCTGGGATGGTTTCCGAAGGCCAGAAAGTCATTCTTGTTGAGGCAAA
TGAAGCCACTGGCTCTTCATCGGCATCTATCTCTTGGAAATTAGTGGAAGAGAAGAAACCTGGTCCATTT
GGGAGTCAGGACACCTATATCAACATTAGAGAGGAAGTCCCAGAAAATGGCAGAGACGGAAGCTACCATT
TTGCCCTGAGTGGAAAATCCTTTCATGTTATAAGCCAATATTTCAGCAGCTTATTGCCAAAGATACTGAT
CAATGGGACCATCTTTGCAAGAATGTCTCCTGGGCAAAAGTCAAGCCTGGTGGAAGAATTCCAGAAACTG
GACTACTTTGTAGGTATGTGTGGAGATGGTGCCAATGACTGTGGGGCCCTGAAGATGGCTCATGTCGGTA
TCTCTTTATCAGAGCAGGAGGCATCGGTGGCCTCTCCTTTCACTTCCAAGACTCCAAACATCGAATGCGT
GCCACATCTCATCAAGGAAGGCCGCGCTGCTCTCGTTACATCCTTTTGCATGTTTAAGTACATGGCCCTC
TACAGCATGATTCAGTATGTTGGTGTTCTGCTGCTCTACTGGAAGACAAACAGCCTTTCAAATTACCAGT
TTCTATTCCAGGATCTGGCCATCACGACTCTTATTGGTGTAACAATGAATCTGAATGGTGCCAACCCCAA
GCTCGTGCCTTTCAGACCCGCAGGGCGGCTGATCTCACCACCTCTTCTGCTCTCGGTTGTCCTCAACATC
CTGCTCAGTTTGGCCATGCACATCGTGGGCTTCATCCTGGTGCAGAAGCAGCCTTGGTATATCATGGACT
ATCACAGTGTCTGCCCTGTGAGGAATGAGAGCGCCTCAGCCTTAGCTGCATCTCCCAGCGTTCCTGAGAA
AACCAGAAGTAACAGCACCTTTGCGAGTTTTGAGAATACGACAATATGGTTTTTGGGAACAATCAACTGT
ATCTTTGTGGCTCTTGTATTCTCTAAAGGAAAGCCATTTAGGCAGCCCACCTATACAAACTATATATTTG
TCCTTGTGCTGATCTTACAGATGGGCGTATGTCTTTTCATTCTATTTGCGGATATCCCAGAGATGCATAG
GCGTTTGGACCTGCTCTGCACTCCTGTCCTGTGGAGAGTCTACATTCTCATCATGATCAGCTCCAACTTT
GTTGTGTCCCTTGCTGTGGAGAAGGCCATTATTGAAAACCGAGCTCTGTGGATAGCAGTCAAAAGATGTT
TTGGTTATCAATCAAAAAGTCAGTATCGGATATGGCAGAGGAACTTGGCAAATGATTCAAGCTGGCCCCC
ACTGAACCAAACCTCCTACTCTGACATGCAGGGGGTGTCCTACAGCAACCCGGTGTTTGAGAGCAATGAG
GAGCAACTTTGA

Translation (1193 aa):
MGDHLEKSQHALLNEGDENEMEIFGYRTQGCRKALCLIGSIFSLGMLPLVFYWRPAWRVWANCVPCSLQE
ADVVLLKTTDEFKIYSWKKVIWISLSALSSTSGLTPDHPLITDEGYIINRAIRKPDLKVRYIKVQKIRYV
WNNLEGQFQKIGSLEDWLSSAKIHQKFGLGLTSEEQEIRRLICGPNAIDVEITPIWKLLIKEVLNPFYIF
QLFSVCLWFSEDYKEYALAIILMSVISIALTVYDLRQQSVKLHHLVESHNSITVSVYERKAGAQDLESRL
LVPGDLLILTGSRVQMPCDAILIDGSCVVDEGMLTGESIPVTKTPLSQTASSVPWKMQSEADPRRHVLFC
GTEVIQAKAAGSGAVRAVVLQTGFNTAKGDLVRSILYPKPMNFKLYRDAIRFLLCLVGTATIGMVYTLCV
YVLSGEPPEEVVRKALDVITIAVPPALPAALTTGIIYAQRRLKKKGIFCISPQRINVCGQLNLVCFDKTG
TLTRGGLDPWGVVPCDQNGFQAVHSFASGKALPQGPLCAAMASCHSLILLDGTIQGDPLDLKMFEATKWE
MTASGDDFHIKEMLAHTIVVKPTDMVAQVPAEGLAIVHQFPFSSALQRMTVIVQEMGGGRLAFMKGAPER
VASFCQPDTVPTSFISELQIYTTQGFRVIALAYKKLEMDCPTTALMREKVESDLVFLGLLILENRLKEET
KPVLEELISARIRTVMITGDNLQTAITVARKSGMVSEGQKVILVEANEATGSSSASISWKLVEEKKPGPF
GSQDTYINIREEVPENGRDGSYHFALSGKSFHVISQYFSSLLPKILINGTIFARMSPGQKSSLVEEFQKL
DYFVGMCGDGANDCGALKMAHVGISLSEQEASVASPFTSKTPNIECVPHLIKEGRAALVTSFCMFKYMAL
YSMIQYVGVLLLYWKTNSLSNYQFLFQDLAITTLIGVTMNLNGANPKLVPFRPAGRLISPPLLLSVVLNI
LLSLAMHIVGFILVQKQPWYIMDYHSVCPVRNESASALAASPSVPEKTRSNSTFASFENTTIWFLGTINC
IFVALVFSKGKPFRQPTYTNYIFVLVLILQMGVCLFILFADIPEMHRRLDLLCTPVLWRVYILIMISSNF
VVSLAVEKAIIENRALWIAVKRCFGYQSKSQYRIWQRNLANDSSWPPLNQTSYSDMQGVSYSNPVFESNE
EQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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