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Report for CCDS49832.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49832.1 Public Mus musculus 16 Rubcn 23 108 98 CCDS HistoryNCBI Gene:100502698Re-query CCDS DB by CCDS ID:49832.1Re-query CCDS DB by GeneID:100502698See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49832.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089684.9 ENSMUSP00000087114.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089684.9Link to Ensembl Protein Viewer:ENSMUSP00000087114.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000089684Re-query CCDS DB by Protein ID:ENSMUSP00000087114
Original member Current member NCBI NM_001200038.1 NP_001186967.1 Accepted alive Link to Nucleotide Sequence:NM_001200038.1Link to Protein Sequence:NP_001186967.1Re-query CCDS DB by Nucleotide ID:NM_001200038Re-query CCDS DB by Protein ID:NP_001186967Link to BLAST:NP_001186967.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186967.1 956 Q80U62-1 956 100% 0 0

Chromosomal Locations for CCDS 49832.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 32823968 32824146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32824379 32824472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32825564 32825717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32826135 32826196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32826685 32826923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32827288 32827352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32827859 32828004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32828669 32828801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32829265 32829322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32835914 32836015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32836410 32836620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32838238 32838353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32841537 32841581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32842998 32843531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32844547 32844706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32847217 32847323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32847830 32847989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32849678 32849761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32856892 32857045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32868093 32868160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2871 nt):
ATGCGTCCGGAGGGCGCGGGAATGGATCTTGGCGGCGGCGATGGGGAGCGTCTGCTAGAGAAGAGCAGGA
GGGAGCACTGGCAGCTGCTGGGTAATTTGAAGACGACTGTGGAAGGTTTGGTGTCAGCCAACTGCCCCAA
TGTCTGGTCCAAGTATGGTGGCCTGGAGCGGCTGTGCAGGGACATGCAGAACATCCTGTATCATGGGCTC
ATCCATGACCAGGTGTGTTGCCGCCAGGCTGATTACTGGCAGTTTGTGAAAGACATTCGGTGGCTCAGCC
CGCACTCAGCCCTTCACGTGGAGAAGTTCATCAGTTTGCATGAGAGCGACCAGAGCGACACTGACAGCGT
GAGTGAGCGTGCTGTTGCAGAGCTGTGGCTGCAGCATAGCCTGCAGTGCCACTGCCTCTCAGCCCAGCTC
CGGCCTCTGCTCGGGGACAGACAGTACATCAGAAAATTCTACACAGAAACTGCCTTCCTGCTGAGTGACG
CCCACGTCACAGCCATGCTCCAGTGCCTGGAAGCAGTGGAACAGAACAACCCCCGTCTTCTGGCTCAGAT
CGATGCATCCATGTTTGCCAGAAAGCAGGAGAGCCCGCTGCTGGTCACAAAGAGCCAGAGTCTGACCGCT
CTGCCTGGTTCCACATACACCCCTCCAGCTAGCTATGCTCAGCATTCCTACTTTGGGTCCTCCTCCAGCC
TTCAGTCTATGCCACAGTCCAGCCACAGCTCAGAGAGAAGATCTACTTCCTTTTCACTCTCTGGCCCTTC
CTGGCAACCTCAAGAAGACAGAGAATGCCTCTCACCAGCAGAGACTCAAACCACCCCAGCTCCGCTGCCT
TCAGACTCTACTCTAGCCCAGGATTCCCCACTGACAGCACAGGAGATGAGCGACAGCACTCTGACTAGCC
CCCTAGAGGCATCCTGGGTCAGCAGCCAGAATGACTCCCCAAGTGATGTCAGTGAGGGGCCCGAGTACCT
GGCCATTGGCAACCCAGCCCCTCATGGCCGGACTGCCAGTTGTGAGAGTCACAGCAGCAACGGCGAGAGC
AGCAGCTCTCACTTGTTCTCCTCCAGCAGCTCTCAAAAGCTGGAGTCTGCTGCCTCTTCTCTAGGGGACC
AAGAGGAAGGCAGGCAGAGTCAGGCAGGCAGCGTCCTTCGCAGGTCCAGCTTCTCAGAAGGGCAGACAGC
CCCTGTCGCCAGCGGGACAAAGAAGAGCCATATTCGCTCCCACTCGGACACCAACATTGCCTCCAGAGGA
GCCGCAGGAGGCCCCAGGAATATCACCATTATAGTTGAAGATCCCATTGCAGAGGGTGGTCAGTACCTCT
GCTCAGGAGAAGGCATGTTTAGAAGACCATCAGAAGGACAGTCCCTCATCAGTTACCTCTCTGAGCAAGA
CTTTGGCAGCTGTGCAGACCTGGAAAAGGAAAACGCCCACTTCAGCATCTCCGAGTCCTTGATTGCCGCC
ATTGAGCTGATGAAGTGCAACATGATGAGCCAGTGTCTAGAAGAGGAGGAAGTAGAGGAGGAAGATAGTG
ACCGAGAGATCCAGGAACTGAAGCAGAAGATCCGCCTTCGGCGCCAGCAGATCCGCACCAAAAACCTGCT
CCCTGCGTACCGGGAGACTGAGAATGGAAGCTTCCGGGTCACCTCCAGCAGCTCCCAGTTCAGTTCACGG
GATTCGACGCAGCTCTCTGAGTCCGGCTCTGCTGAGGATGCTGACGACTTGGAAATCCAAGACGCTGACA
TCCGGAGGAGTGCAGTCTCAAACGGCAAATCATCCTTCTCCCAGAATCTCTCGCACTGCTTCCTGCACTC
CACATCGGCTGAGGCAGTGGCCATGGGGCTTCTGAAGCAGTTTGAGGGGATGCAGCTTCCAGCTGCCTCG
GAGCTCGAGTGGCTAGTCCCAGAGCATGATGCTCCACAGAAGCTCCTACCCATCCCCGACTCCCTGCCCA
TCTCACCAGATGACGGGCAGCACGCGGACATCTACAAGCTGCGAATCCGCGTCCGTGGCAACCTGGAGTG
GGCTCCGCCCCGGCCGCAGATCATTTTTAATGTTCATCCAGCCCCCACGAGGAAGATTGCCGTGGCCAAG
CAGAATTACCGCTGTGCGGGATGTGGCATCCGGACGGACCCCGACTATATCAAGCGGCTGCGGTACTGTG
AGTACCTAGGCAAGTACTTCTGCCAGTGCTGCCACGAGAACGCCCAGATGGTCGTCCCCAGCCGCATTCT
GCGCAAATGGGACTTCAGCAAGTACTATGTCAGCAACTTCTCCAAGGACCTGCTCCTGAAGATCTGGAAT
GATCCTCTCTTCAATGTGCAGGACATCAATAGCGCACTCTACAGGAAGGTCAAGCTGCTTAACCAAGTCC
GGCTGCTGCGGGTTCAGCTGTACCACATGAAGAACATGTTTAAGACATGCCGACTGGCCAAAGAGCTCCT
GGATTCCTTTGACGTGGTTCCAGGCCACCTGACAGAGGACCTCCATCTGTACTCGCTGAGTGACCTGACT
GCAACCAAGAAGGGAGAACTGGGGCCCCGGCTGGCGGAGCTCACTAGAGCGGGAGCCGCCCACGTGGAGA
GATGCATGCTGTGTCAGGCCAAGGGCTTCATCTGTGAATTCTGTCAGAATGAGGAGGATGTCATCTTTCC
TTTTGAGCTGCATAAGTGCCGGACTTGTGAAGAGTGTAAAGCGTGTTACCATAAAACTTGCTTCAAGTCT
GGACGCTGCCCCCGGTGTGAGCGGCTGCAGGCCCGACGGGAGCTGCTGGCCAAGCAGAGCCTGGAGTCCT
ACCTGTCTGACTATGAGGAGGAGCCCACAGAAGCCTTGGCTCTAGAGGCCACCGTCCTAGAGACCACCTG
A

Translation (956 aa):
MRPEGAGMDLGGGDGERLLEKSRREHWQLLGNLKTTVEGLVSANCPNVWSKYGGLERLCRDMQNILYHGL
IHDQVCCRQADYWQFVKDIRWLSPHSALHVEKFISLHESDQSDTDSVSERAVAELWLQHSLQCHCLSAQL
RPLLGDRQYIRKFYTETAFLLSDAHVTAMLQCLEAVEQNNPRLLAQIDASMFARKQESPLLVTKSQSLTA
LPGSTYTPPASYAQHSYFGSSSSLQSMPQSSHSSERRSTSFSLSGPSWQPQEDRECLSPAETQTTPAPLP
SDSTLAQDSPLTAQEMSDSTLTSPLEASWVSSQNDSPSDVSEGPEYLAIGNPAPHGRTASCESHSSNGES
SSSHLFSSSSSQKLESAASSLGDQEEGRQSQAGSVLRRSSFSEGQTAPVASGTKKSHIRSHSDTNIASRG
AAGGPRNITIIVEDPIAEGGQYLCSGEGMFRRPSEGQSLISYLSEQDFGSCADLEKENAHFSISESLIAA
IELMKCNMMSQCLEEEEVEEEDSDREIQELKQKIRLRRQQIRTKNLLPAYRETENGSFRVTSSSSQFSSR
DSTQLSESGSAEDADDLEIQDADIRRSAVSNGKSSFSQNLSHCFLHSTSAEAVAMGLLKQFEGMQLPAAS
ELEWLVPEHDAPQKLLPIPDSLPISPDDGQHADIYKLRIRVRGNLEWAPPRPQIIFNVHPAPTRKIAVAK
QNYRCAGCGIRTDPDYIKRLRYCEYLGKYFCQCCHENAQMVVPSRILRKWDFSKYYVSNFSKDLLLKIWN
DPLFNVQDINSALYRKVKLLNQVRLLRVQLYHMKNMFKTCRLAKELLDSFDVVPGHLTEDLHLYSLSDLT
ATKKGELGPRLAELTRAGAAHVERCMLCQAKGFICEFCQNEEDVIFPFELHKCRTCEECKACYHKTCFKS
GRCPRCERLQARRELLAKQSLESYLSDYEEEPTEALALEATVLETT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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