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Report for CCDS49843.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49843.1 Public Mus musculus 16 Eaf2 23 108 98 CCDS HistoryNCBI Gene:106389Re-query CCDS DB by CCDS ID:49843.1Re-query CCDS DB by GeneID:106389See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49843.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114829.8 ENSMUSP00000110477.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114829.8Link to Ensembl Protein Viewer:ENSMUSP00000110477.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114829Re-query CCDS DB by Protein ID:ENSMUSP00000110477
Original member Current member NCBI NM_001113401.1 NP_001106872.1 Accepted alive Link to Nucleotide Sequence:NM_001113401.1Link to Protein Sequence:NP_001106872.1Re-query CCDS DB by Nucleotide ID:NM_001113401Re-query CCDS DB by Protein ID:NP_001106872Link to BLAST:NP_001106872.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106872.1 262 Q91ZD6-1 262 100% 0 0

Chromosomal Locations for CCDS 49843.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 36793880 36793926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36800587 36800844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36808015 36808160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36810472 36810608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36824658 36824752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36828051 36828156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGAGTGGACCAGCGGGACTTGCATACCTGGACCGTCGCGAGCGGGTTCTCAAGCTAGGCGAAAGTTTCG
AGAAGCAGCCGCGCTGTGCCTTCCACACCGTGCGCTATGACTTCAAACCTGCTTCTATTGATACTTCTTG
TGAAGGAAATCTTGAGGTTGGCAAAGGTGAACAGGTGACAATAACTCTTCCAAATATAGAAGGTTCAACT
CCACCAGTCACAGTTTTCAAAGGTTCCAAGAGACCTTACTTAAAAGAATGCATTTTGATTATTAACCATG
ATACTGGGGAATGTCGCCTAGAAAAGCTCAGCAGCAACATCACTGTGAAAAAAACAAGAGTGGAAGGGAG
TAGCAGAATCCAGTACAGACTAGAACAACAGCAACAGCAAATGTGGAATCTGCCTAGGACTTCCAATCTT
GTACAGCATTCTCCATCAGAAGAGAAGATGTCTCCAACGTCTCTAATGGATGATATTGAAAGAGAACTGA
AAGCAGAAGCTAGTCTTATGGACCAGATGAGTAGTTGTGATAGTTCATCAGATTCCAAAAGTTCTTCATC
TTCAAGTAGTGAGGATAGTTCTAGTGATTCTGAAGATGATGACCAATTCTCTCCTTTGGGTCCAAGGAAA
TACAGCTCGGAGCACCCTAGCATGTCTGCTGGGCCACAGTACAGGACTTCAGAGGCTGATGCTACTTGTC
ACCGACTTCAGGACCACAGTACCCTTCTGATGAGTACTTTACGAAGTGACTTGCAGCTGAGTGAGTCAGA
AAGCGACAGTGAGGACTGA

Translation (262 aa):
MSGPAGLAYLDRRERVLKLGESFEKQPRCAFHTVRYDFKPASIDTSCEGNLEVGKGEQVTITLPNIEGST
PPVTVFKGSKRPYLKECILIINHDTGECRLEKLSSNITVKKTRVEGSSRIQYRLEQQQQQMWNLPRTSNL
VQHSPSEEKMSPTSLMDDIERELKAEASLMDQMSSCDSSSDSKSSSSSSSEDSSSDSEDDDQFSPLGPRK
YSSEHPSMSAGPQYRTSEADATCHRLQDHSTLLMSTLRSDLQLSESESDSED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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