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Report for CCDS49846.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49846.1 Public Mus musculus 16 Stxbp5l 23 108 98 CCDS HistoryNCBI Gene:207227Re-query CCDS DB by CCDS ID:49846.1Re-query CCDS DB by GeneID:207227See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49846.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114780.7 ENSMUSP00000110428.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114780.7Link to Ensembl Protein Viewer:ENSMUSP00000110428.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114780Re-query CCDS DB by Protein ID:ENSMUSP00000110428
Original member NCBI NM_001114611.1 NP_001108083.1 Updated not alive Link to Nucleotide Sequence:NM_001114611.1Link to Protein Sequence:NP_001108083.1Re-query CCDS DB by Nucleotide ID:NM_001114611Re-query CCDS DB by Protein ID:NP_001108083
Current member NCBI NM_001114611.2 NP_001108083.1 Accepted alive Link to Nucleotide Sequence:NM_001114611.2Link to Protein Sequence:NP_001108083.1Re-query CCDS DB by Nucleotide ID:NM_001114611Re-query CCDS DB by Protein ID:NP_001108083Link to BLAST:NP_001108083.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001108083.1 1104 Q5DQR4-4 1104 100% 0 0

Chromosomal Locations for CCDS 49846.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 37115656 37115697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37115832 37116052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37121799 37121910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37129799 37129964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37134173 37134533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37139844 37140083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37174297 37174362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37188569 37188720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37200576 37200701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37204406 37204578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37208044 37208261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37210170 37210210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37214850 37214917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37215923 37216070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37236230 37236302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37241339 37241493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37247870 37247948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37255809 37255932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37261884 37261967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37288287 37288350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37290929 37291063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37323528 37323628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37329876 37329957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37345071 37345168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37383512 37383697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3315 nt):
ATGAAGAAGTTTAATTTCCGAAAAGTTTTGGATGGCTTAACTGCCTCTTCCCCTGGCAGTGGTAGCAGCA
GTGGCAGTAACAGTGGTGGGGCTGGAAGTGGCTCTGTCCATCCAGGAGGGACTGCAGGGCTTCCGAGAGA
GGAAATTCAGGAAAGCCTGACTTCAGACTATTTCCAGATTTGCAAGACAGTTCGGCATGGGTTTCCTTAT
CAGCCCACAGCATTGGCCTTTGATCCAGTCCAGAAAATCTTAGCTATTGGAACAAGAACAGGTGCTATAC
GAATACTTGGGAGGCCTGGTGTTGACTGTTACTGCCAACATGAAAGTGGTGCGGCTGTCTTGCAGCTCCA
ATTCCTCATCAATGAGGGCGCGTTGGTCAGTGCGAGTTCAGATGACACGCTTCATTTGTGGAATCTGAGA
CAGAAAAGGCCGGCCATTCTCCATTCTCTTAAATTTAACAGAGAACGAATTACTTACTGTCATCTACCTT
TCCAGAGTAAATGGCTCTATGTTGGAACAGAAAGAGGAAATACACATATTGTAAATATTGAATCTTTCAT
TCTTTCTGGATATGTCATCATGTGGAACAAGGCAATTGAACTCTCCACCAAGACTCATCCAGGCCCAGTT
GTACATTTAAGTGATAGCCCAAGAGATGAAGGAAAACTGTTAATAGGTTACGAGAATGGCACTGTGGTGT
TCTGGGACTTGAAATCTAAAAGAGCAGAACTGAGAGTTTATTATGATGAGGCTATTCATTCAATTGATTG
GCATCATGAGGGCAAACAATTCATGTGCAGCCACTCAGATGGTAGCTTGACTTTATGGAACCTGAAAAGC
CCAAGCCGCCCTTTCCAAACCACAGTCCCACATGGAAAAAGTCAAAGAGAAGGAAGAAAGTCTGAGTCTT
GTAAACCTATTCTTAAAGTAGAATACAAAACGTGCAGGAACAGTGAACCATTTATAATATTCTCTGGCGG
GCTGTCATATGACAAAGCTTGCAGAAGACCAAGTTTAACCATCATGCATGGGAAAGCAATTACAGTGCTT
GAGATGGATCATCCTATTGTTGAGTTTCTAACGTTATGTGAAACGCCCTATCCAAATGAATTTCAAGAAC
CCTATGCTGTTGCTGTACTTCTAGAGAAAGATCTCATCGTAGTTGACCTGACACAAACCAATTTTCCAAT
CTTTGAAAATCCATATCCAATGGACATTCATGAGTCACCTGTTACATGCACAGCATATTTTGCCGATTGC
CCTCCAGATTTGATTCTAGTACTCTATTCTATAGGAGTCAAGCATAAAAAACAAGGATACAGTAATAAGG
AATGGCCAGTCAGTGGAGGAGCTTGGAACCTCGGAGCACAAACTTATCCAGAAATTATTATTACTGGTCA
TGCTGATGGAACAATAAAATTTTGGGATGCTTCAGCAATGACACTGCAGATGTTGTACAAGCTAAAAACT
TCCAAAGTGTTTGAAAAGCAGAAGGCAGGAGAAGGCAAACAGACGTGTGAACTTGTAGAGGAAGATCCCT
TTGCTGTGCAGATGATCTACTGGTGTCCAGAGAGCAGAATATTTTGTGTCTCTGGAGTCTCTGCATATGT
CATAATTTATAAATTCAGCAGACATGAAGTCACAACAGAAATAGTGTCACTAGAGGTACGACTTCAGTGT
GATGTTGAAGACATTATTACTCCTGAGCCAGAAACAAGCCCTCCATTTCCAGATCTCTCCTCTCAACTTC
CTCCTTCAAGGAGTCTTTCTGGAAGCACTAATACTGTGTCTAGTGAAGGAGTGACAAAGGACAGCATCCC
GTGCCTCAGTGTTAAAACACGGCCAGTACGAATGCCGCCGGGCTATCAAGCAGATCTTGTTATTCAGTTG
GTGTGGGTAGATGGTGAGCCTCCTCAGCAAATTACCAGCCTTTCTATAAGCTCAGCATATGGAATAGTGG
CATTTGGAAACTGCACTGGGCTGGTTGTGGTGGATTTCATACAGAAGACAGTGCTATTAAGCATGGGGAC
CATTGACCTCTATAGATCAAGTGACCTGTACCAGCGACAGCCCCGGTCTCCTCGAAAGAACAGGCAGTTC
ATTGCAGGCTTAACAGAGCTGAATGATAGTCCAGTTCCCCTGGAACTTGAGCGCTGCAAGTCCCCCACCT
CAGAAACCCGAGAGAATTCCTATAATCGCTCCAGGAGCTCTAGCATCTCCAGTATTGACAAAGATTCTAA
AGAAGCAATTACAGCTTTATACTTCATGGAATCCTTTGCACGGAAAAATGACTCTACCGTTTCCCCTTGT
CTGTTTGTTGGAACTAGTCTGGGAATGGTAGTACTCATCTCCCTAAATCTACCATCATCAGATGAACAAA
GGTTTACAGAGCCGGTGGTGGTATTGCCAAGTGGTACATTCCTCTCACTGAAAGGAGCAGTGCTAACATT
TTCCTGCATGGACAGAACTGGCAGTTTAATGCAGCCTCCATACGAAGTATGGAGAGATCCAAACAACACA
GATGAAAATGAAAAAACCTGGAAAAGGAAATTGGTCATGAACTACTCGTCTTCATCCCAAGAGATGGGAG
ACCATCAGTATACGATAATCTGCTCAGAAAAACAAGCCAAAGTCTTCTCACTGCCTTCCCAGACCTGCCT
TTATGTTCACAACATCACCGAGACGTCGTTCATATTGCAAGCAGATGTGGTGGTCATGTGCAACAGTGCC
TGCCTGGCCTGCTTTTGTGCAAATGGGCATATCATGATAATGAGCTTACCTAGTCTTCGCCCAATGTTGG
ATGTTAATTATTTGCCACTGACAGACATGAGAATAGCACGGACATTTTGTTTTACTAATGAAGGACAGGC
ATTATACCTCGTCTCTCCCACTGAAATTCAACGGTTAACATATAGCCAAGAAATGTGTGATAATATTCAG
GACATGTTAGGCGATTTGTTTACTCCCATAGAGACACCAGAAGCCCAAAATAGAGGCTTTCTCAAGGGAC
TATTTGGTGGAAGTGGACAGACATTCGACAGAGAAGAACTCTTCGGGGAAGCCTCAGCAGGAAAAGCATC
CCGAAGCCTCGCACAGCACATCCCTGGGCCAGGTAGTATAGAAGGGATGAAAGGTGCTGCTGGCGGGGTG
ATGGGAGAGCTGACCCGAGCCCGGATTGCACTTGATGAGAGAGGGCAGCGTCTGGGCGAGCTGGAAGAGA
AGACTGCGGGCATGATGACCAGCGCAGAAGCGTTTTCCAAGCACGCACATGAGCTAATGCTGAAGTATAA
GGATAAGAAGTGGTACCAGTTCTAA

Translation (1104 aa):
MKKFNFRKVLDGLTASSPGSGSSSGSNSGGAGSGSVHPGGTAGLPREEIQESLTSDYFQICKTVRHGFPY
QPTALAFDPVQKILAIGTRTGAIRILGRPGVDCYCQHESGAAVLQLQFLINEGALVSASSDDTLHLWNLR
QKRPAILHSLKFNRERITYCHLPFQSKWLYVGTERGNTHIVNIESFILSGYVIMWNKAIELSTKTHPGPV
VHLSDSPRDEGKLLIGYENGTVVFWDLKSKRAELRVYYDEAIHSIDWHHEGKQFMCSHSDGSLTLWNLKS
PSRPFQTTVPHGKSQREGRKSESCKPILKVEYKTCRNSEPFIIFSGGLSYDKACRRPSLTIMHGKAITVL
EMDHPIVEFLTLCETPYPNEFQEPYAVAVLLEKDLIVVDLTQTNFPIFENPYPMDIHESPVTCTAYFADC
PPDLILVLYSIGVKHKKQGYSNKEWPVSGGAWNLGAQTYPEIIITGHADGTIKFWDASAMTLQMLYKLKT
SKVFEKQKAGEGKQTCELVEEDPFAVQMIYWCPESRIFCVSGVSAYVIIYKFSRHEVTTEIVSLEVRLQC
DVEDIITPEPETSPPFPDLSSQLPPSRSLSGSTNTVSSEGVTKDSIPCLSVKTRPVRMPPGYQADLVIQL
VWVDGEPPQQITSLSISSAYGIVAFGNCTGLVVVDFIQKTVLLSMGTIDLYRSSDLYQRQPRSPRKNRQF
IAGLTELNDSPVPLELERCKSPTSETRENSYNRSRSSSISSIDKDSKEAITALYFMESFARKNDSTVSPC
LFVGTSLGMVVLISLNLPSSDEQRFTEPVVVLPSGTFLSLKGAVLTFSCMDRTGSLMQPPYEVWRDPNNT
DENEKTWKRKLVMNYSSSSQEMGDHQYTIICSEKQAKVFSLPSQTCLYVHNITETSFILQADVVVMCNSA
CLACFCANGHIMIMSLPSLRPMLDVNYLPLTDMRIARTFCFTNEGQALYLVSPTEIQRLTYSQEMCDNIQ
DMLGDLFTPIETPEAQNRGFLKGLFGGSGQTFDREELFGEASAGKASRSLAQHIPGPGSIEGMKGAAGGV
MGELTRARIALDERGQRLGELEEKTAGMMTSAEAFSKHAHELMLKYKDKKWYQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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