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Report for CCDS49884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49884.1 Public Mus musculus 16 Vgll3 23 108 98 CCDS HistoryNCBI Gene:73569Re-query CCDS DB by CCDS ID:49884.1Re-query CCDS DB by GeneID:73569See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49884.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168064.2 ENSMUSP00000131500.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168064.2Link to Ensembl Protein Viewer:ENSMUSP00000131500.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168064Re-query CCDS DB by Protein ID:ENSMUSP00000131500
Original member Current member NCBI NM_028572.2 NP_082848.1 Accepted alive Link to Nucleotide Sequence:NM_028572.2Link to Protein Sequence:NP_082848.1Re-query CCDS DB by Nucleotide ID:NM_028572Re-query CCDS DB by Protein ID:NP_082848Link to BLAST:NP_082848.1

Chromosomal Locations for CCDS 49884.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 65815633 65815758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 65827894 65828176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 65839209 65839733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 65860670 65860713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGAGTTGTGCGGAGGTGATGTATCACCCCCAGCCGTATGGAGCGCCCCAGTATCTGCCCAACCCTGTGG
CAGCTGCAACCTGCCCTACAGCCTGCTATCATCCGGCTCCCCAACCTGGCCAGCAGAAGTTAGCGGTATA
CAGCAAGATGCAGGACTCTCTGGAAGTCACGCTTCCCAGCAAACAAGAGGAGGAGGAGGAGGAGGAGGAG
GATGAGGAGGAGGAGGAGAAAGACCAGCCTGCCGAGATGGAGTACCTTAACTCTCGCTGTGTCCTTTTCA
CTTATTTCCAGGGAGACATTGGGTCAGTAGTGGATGAACACTTCTCAAGAGCTTTGGGCCAAGCCAACAC
CTTGCATCCCGAATCTGCCATTTCAAAAAGCAAGATGGGGCTAACCCCCCTATGGCGAGACAGCTCAGCT
CTTTCGAGCCAGCGGAGTAATTTTCCAACTTCCTTTTGGACCAGCTCTTACCAACCCCCACCCGCGCCTT
GTTTGGGGGGAGTTCATCCTGACTTCCAAGTCACTGCACCCCACGGCACCTTTACTACAGCAGATCCCAA
CTCTTGGCCAGGACATGGCCTGCATCAGACTGGCCCCGCCCCACCCCCCACTGCGTCTGAGTCTTGGCAC
TATCCTCTGGCATCTCAGGTGAGCCCGTCCTACAGCCACATGCATGACATGTACCTGCGCCATCATCACC
CTCACGCTCACGTGCACCATCGCCACCACCACCACCACCACCCAACTGCTGGCTCTGCCTTGGATCCCGC
CTATGGCCACCTGCTAATGCCATCAGTGCGAGCTGCCAGGATTCCTGCTCCCCAGTGCGACATCACCAAG
ACAGATCTGACTACAGTCACCACGGCTACCTCAGCATGGGCCGGAGCCTTTCATGGGACAGTGGACATCG
TGCCAAGTGTGGGCTTCGATACAGGTCTTCAGCATCAGGACAAGAGCAAAGAATCAACTTGGTACTGA

Translation (325 aa):
MSCAEVMYHPQPYGAPQYLPNPVAAATCPTACYHPAPQPGQQKLAVYSKMQDSLEVTLPSKQEEEEEEEE
DEEEEEKDQPAEMEYLNSRCVLFTYFQGDIGSVVDEHFSRALGQANTLHPESAISKSKMGLTPLWRDSSA
LSSQRSNFPTSFWTSSYQPPPAPCLGGVHPDFQVTAPHGTFTTADPNSWPGHGLHQTGPAPPPTASESWH
YPLASQVSPSYSHMHDMYLRHHHPHAHVHHRHHHHHHPTAGSALDPAYGHLLMPSVRAARIPAPQCDITK
TDLTTVTTATSAWAGAFHGTVDIVPSVGFDTGLQHQDKSKESTWY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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