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Report for CCDS49920.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49920.1 Public Mus musculus 16 Pigp 23 108 98 CCDS HistoryNCBI Gene:56176Re-query CCDS DB by CCDS ID:49920.1Re-query CCDS DB by GeneID:56176See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49920.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113914.7 ENSMUSP00000109547.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113914.7Link to Ensembl Protein Viewer:ENSMUSP00000109547.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113914Re-query CCDS DB by Protein ID:ENSMUSP00000109547
Original member Current member NCBI NM_001159617.1 NP_001153089.1 Accepted alive Link to Nucleotide Sequence:NM_001159617.1Link to Protein Sequence:NP_001153089.1Re-query CCDS DB by Nucleotide ID:NM_001159617Re-query CCDS DB by Protein ID:NP_001153089Link to BLAST:NP_001153089.1

Chromosomal Locations for CCDS 49920.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 94364663 94364787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94365355 94365473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94367561 94367633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94370089 94370192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94370741 94370937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGCCCGGGCATCTCGGCTGCGGCGGGACGCGCAGACGCTTCCGTGAGCCCCGCCGCGCGCAGGGTCTGC
ACTCACCCGGGCCCGCAGCCCGCGAGCCTCAGACGCGGGCTGCCGACGCCTCCGGCCCTCCACGTCAACC
AGACCCGCAGAGCGAACGCTCCGCGGCTCCTGAGGCGGGCGGGTCACGTGGCTTAGGATTGTCTAAAGCC
ACAGGGAAGATGGTGGAAAATTCACCGTCGCCATTGCCAGAAAGAGCGATTTATGGCTTTGTTCTTTTCC
TAAGCTCACAATTTGGCTTCATACTTTATCTTGTGTGGGCTTTCGTTCCCGAATCTTGGTTAAACTCCTT
AGGCTTAACTTACTGGCCTCAAAAATACTGGGCGGTTGCATTGCCCGTCTACCTCCTTATCACAGTTGTA
ATTGGTTATGTGCTCTTATTTGGAATCAACATGATGAGTACCTCTCCACTTGACTCCATTCATACGATCA
CAGATAACTATGCTAAAAACCAACAGAGGAAAAACTACCAAGAGGATGCCATCCCAGCATTGAGAGATGT
CCCCATTAGTGAAGTAAACAAAATGTTTTTCCTAGGAGCCAAAGAACTCAATACCTAA

Translation (205 aa):
MPGHLGCGGTRRRFREPRRAQGLHSPGPAAREPQTRAADASGPPRQPDPQSERSAAPEAGGSRGLGLSKA
TGKMVENSPSPLPERAIYGFVLFLSSQFGFILYLVWAFVPESWLNSLGLTYWPQKYWAVALPVYLLITVV
IGYVLLFGINMMSTSPLDSIHTITDNYAKNQQRKNYQEDAIPALRDVPISEVNKMFFLGAKELNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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