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Report for CCDS49936.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49936.1 Public Mus musculus 17 Dynlt1b 23 108 98 CCDS HistoryNCBI Gene:21648Re-query CCDS DB by CCDS ID:49936.1Re-query CCDS DB by GeneID:21648See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49936.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179569.2 ENSMUSP00000137171.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179569.2Link to Ensembl Protein Viewer:ENSMUSP00000137171.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179569Re-query CCDS DB by Protein ID:ENSMUSP00000137171
Original member Current member NCBI NM_009342.2 NP_033368.1 Accepted alive Link to Nucleotide Sequence:NM_009342.2Link to Protein Sequence:NP_033368.1Re-query CCDS DB by Nucleotide ID:NM_009342Re-query CCDS DB by Protein ID:NP_033368Link to BLAST:NP_033368.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033368.1 113 P51807 113 100% 0 0

Chromosomal Locations for CCDS 49936.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 6430212 6430238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6431880 6431921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6435008 6435131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6435470 6435547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6435897 6435967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (342 nt):
ATGGAAGACTTCCAGGCCTCAGAGGAGACTGCATTTGTTGTTGATGAAGTGAGCAGCATTGTAAAGGAGG
CTATAGAAAGCGCCATCGGTGGTAATGCCTACCAGCACAGCAAAGTCAACCAGTGGACCACTAATGTCCT
AGAACAGACTTTGAGCCAACTCACCAAACTGGGGAGACCATTTAAATACATTGTGACCTGTGTGATCATG
CAGAAGAACGGTGCTGGGTTACACTCCGCAAGTTCCTGCTTCTGGGACAGCTCCACAGACGGAAGCTGCA
CAGTCCGATGGGAGAACAAGACCATGTACTGCATCGTCAGTACCTTCGGACTGTCCATCTGA

Translation (113 aa):
MEDFQASEETAFVVDEVSSIVKEAIESAIGGNAYQHSKVNQWTTNVLEQTLSQLTKLGRPFKYIVTCVIM
QKNGAGLHSASSCFWDSSTDGSCTVRWENKTMYCIVSTFGLSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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