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Report for CCDS4995.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4995.1 Public Homo sapiens 6 TPBG 24 110 108 CCDS HistoryNCBI Gene:7162Re-query CCDS DB by CCDS ID:4995.1Re-query CCDS DB by GeneID:7162See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4995.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369750.4 ENSP00000358765.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369750.4Link to Ensembl Protein Viewer:ENSP00000358765.4Re-query CCDS DB by Nucleotide ID:ENST00000369750Re-query CCDS DB by Protein ID:ENSP00000358765
Original member Current member EBI ENST00000543496.3 ENSP00000440049.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543496.3Link to Ensembl Protein Viewer:ENSP00000440049.1Re-query CCDS DB by Nucleotide ID:ENST00000543496Re-query CCDS DB by Protein ID:ENSP00000440049
Original member Current member EBI ENST00000535040.4 ENSP00000441219.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535040.4Link to Ensembl Protein Viewer:ENSP00000441219.1Re-query CCDS DB by Nucleotide ID:ENST00000535040Re-query CCDS DB by Protein ID:ENSP00000441219
Original member Current member NCBI NM_001166392.2 NP_001159864.1 Accepted alive Link to Nucleotide Sequence:NM_001166392.2Link to Protein Sequence:NP_001159864.1Re-query CCDS DB by Nucleotide ID:NM_001166392Re-query CCDS DB by Protein ID:NP_001159864Link to BLAST:NP_001159864.1
Original member Current member NCBI NM_001376922.1 NP_001363851.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001376922.1Link to Protein Sequence:NP_001363851.1Re-query CCDS DB by Nucleotide ID:NM_001376922Re-query CCDS DB by Protein ID:NP_001363851Link to BLAST:NP_001363851.1
Original member Current member NCBI NM_006670.5 NP_006661.1 Accepted alive Link to Nucleotide Sequence:NM_006670.5Link to Protein Sequence:NP_006661.1Re-query CCDS DB by Nucleotide ID:NM_006670Re-query CCDS DB by Protein ID:NP_006661Link to BLAST:NP_006661.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159864.1 420 Q13641 420 100% 0 0
NP_001363851.1 420 Q13641 420 100% 0 0
NP_006661.1 420 Q13641 420 100% 0 0

Chromosomal Locations for CCDS 4995.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 82364962 82366224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGCCTGGGGGGTGCTCCCGGGGCCCCGCCGCCGGGGACGGGCGTCTGCGGCTGGCGCGACTAGCGCTGG
TACTCCTGGGCTGGGTCTCCTCGTCTTCTCCCACCTCCTCGGCATCCTCCTTCTCCTCCTCGGCGCCGTT
CCTGGCTTCCGCCGTGTCCGCCCAGCCCCCGCTGCCGGACCAGTGCCCCGCGCTGTGCGAGTGCTCCGAG
GCAGCGCGCACAGTCAAGTGCGTTAACCGCAATCTGACCGAGGTGCCCACGGACCTGCCCGCCTACGTGC
GCAACCTCTTCCTTACCGGCAACCAGCTGGCCGTGCTCCCTGCCGGCGCCTTCGCCCGCCGGCCGCCGCT
GGCGGAGCTGGCCGCGCTCAACCTCAGCGGCAGCCGCCTGGACGAGGTGCGCGCGGGCGCCTTCGAGCAT
CTGCCCAGCCTGCGCCAGCTCGACCTCAGCCACAACCCACTGGCCGACCTCAGTCCCTTCGCTTTCTCGG
GCAGCAATGCCAGCGTCTCGGCCCCCAGTCCCCTTGTGGAACTGATCCTGAACCACATCGTGCCCCCTGA
AGATGAGCGGCAGAACCGGAGCTTCGAGGGCATGGTGGTGGCGGCCCTGCTGGCGGGCCGTGCACTGCAG
GGGCTCCGCCGCTTGGAGCTGGCCAGCAACCACTTCCTTTACCTGCCGCGGGATGTGCTGGCCCAACTGC
CCAGCCTCAGGCACCTGGACTTAAGTAATAATTCGCTGGTGAGCCTGACCTACGTGTCCTTCCGCAACCT
GACACATCTAGAAAGCCTCCACCTGGAGGACAATGCCCTCAAGGTCCTTCACAATGGCACCCTGGCTGAG
TTGCAAGGTCTACCCCACATTAGGGTTTTCCTGGACAACAATCCCTGGGTCTGCGACTGCCACATGGCAG
ACATGGTGACCTGGCTCAAGGAAACAGAGGTAGTGCAGGGCAAAGACCGGCTCACCTGTGCATATCCGGA
AAAAATGAGGAATCGGGTCCTCTTGGAACTCAACAGTGCTGACCTGGACTGTGACCCGATTCTTCCCCCA
TCCCTGCAAACCTCTTATGTCTTCCTGGGTATTGTTTTAGCCCTGATAGGCGCTATTTTCCTCCTGGTTT
TGTATTTGAACCGCAAGGGGATAAAAAAGTGGATGCATAACATCAGAGATGCCTGCAGGGATCACATGGA
AGGGTATCATTACAGATATGAAATCAATGCGGACCCCAGATTAACGAACCTCAGTTCTAACTCGGATGTC
TGA

Translation (420 aa):
MPGGCSRGPAAGDGRLRLARLALVLLGWVSSSSPTSSASSFSSSAPFLASAVSAQPPLPDQCPALCECSE
AARTVKCVNRNLTEVPTDLPAYVRNLFLTGNQLAVLPAGAFARRPPLAELAALNLSGSRLDEVRAGAFEH
LPSLRQLDLSHNPLADLSPFAFSGSNASVSAPSPLVELILNHIVPPEDERQNRSFEGMVVAALLAGRALQ
GLRRLELASNHFLYLPRDVLAQLPSLRHLDLSNNSLVSLTYVSFRNLTHLESLHLEDNALKVLHNGTLAE
LQGLPHIRVFLDNNPWVCDCHMADMVTWLKETEVVQGKDRLTCAYPEKMRNRVLLELNSADLDCDPILPP
SLQTSYVFLGIVLALIGAIFLLVLYLNRKGIKKWMHNIRDACRDHMEGYHYRYEINADPRLTNLSSNSDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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