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Report for CCDS49972.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49972.1 Public Mus musculus 17 Vmn2r93 23 108 98 CCDS HistoryNCBI Gene:627132Re-query CCDS DB by CCDS ID:49972.1Re-query CCDS DB by GeneID:627132See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49972.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079206.7 ENSMUSP00000078200.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079206.7Link to Ensembl Protein Viewer:ENSMUSP00000078200.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000079206Re-query CCDS DB by Protein ID:ENSMUSP00000078200
Original member Current member NCBI NM_001104542.1 NP_001098012.1 Accepted alive Link to Nucleotide Sequence:NM_001104542.1Link to Protein Sequence:NP_001098012.1Re-query CCDS DB by Nucleotide ID:NM_001104542Re-query CCDS DB by Protein ID:NP_001098012Link to BLAST:NP_001098012.1

Chromosomal Locations for CCDS 49972.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 18298281 18298498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18303964 18304258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18304595 18305386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18313141 18313356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18316578 18316701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18325513 18326441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2574 nt):
ATGTTCTCCTGGATTTTTATTTTCTGGCTATTGCAAATTCCCAAACTTGTCTCTGCTTTTACTTTTAAAA
TCAGTAGATGTTATTACATAATCACTGAAGAGTTTCACCATGAAGGAGATTTTATGATTGGTGCCTTTTT
CCCTCTTCATACTTTCTACACTGAAAAGAAAATGCCACATTCAACTATACCATACACATATTTGGATGGC
TACGTACAATATAACTTTAAGAACTACCAGTATATTCTGGCTCTGCAATTTGCCATTGAGGAGATCAATG
GGAACCCCAATCTTTTACCCAACATATCTCTTGGGTTTGACTTCTACAATGTCAGATTCACTGAGAAGGA
CACTCTTATGAATGCTGGTATTTGGCTCACCTCTCATGTGCACAAAATGGTTTTTCCTAATTACACTTGT
GGGAAAAAAAAATTCACTGCTGCACTCACAGGATCATCATGGATGGCATCTGCCCAAATTGGGACATTAC
TTCATCTCTTTAAATTTCCACAGATTACTTTTGGACCTTATGATCCTCTCTTGAGTGACCATAGTCAGTA
TTCTTCTCTCTACCAGATGGCTCCGCAGGACACATCTCTTACACTTGCCATTGTTTCCTTGATTGTTCAT
TTTAGATGGTTGTGGGTTGGTCTCATCCTCCCAGATGACCACAAGGGAAATAAAATTCTATCAGATTTTA
GGGAGGAGATGGAGAGGAAAAGAATCTGCATGGCTTTTGTAAAAATGATCCCAGCCACATGGACTTCATA
CTTTGCCAAATTCTGGAAAAATATGGATGAGACAAATGTAATAATTATTTATGGTGACATTGATTCTCTA
GAAGGTCTAATGAGAAATATTGGGCAAAGGTTATTGACATGGATTGTCTGGGTCATGAACACTGAACACC
ATGTTCTTGAAATTTCTGATTATTTCATGTTAGACTCATTCCATGGAAGCTTAATTTTTAAGCACCATTA
CAGGGAGAATTCTGATTTTACTAAATTTATTCAAACAGTTAATCCTAAAAACTACCCAGAAGACATTTAT
CTTCCTAAGTTGTGGTATTACTTCTTCAAATGCTCATTTTCTGATATTAATTGTCATGTTTTAGACAATT
GTCAAACTAATGCTTCTTTGGATGTATTACCTAGTCACATATTTGATGTGGCTATGACTGAAGAGAGCAC
AAGTATTTATAATGGTGTATATGCTCTGGCTCACAGCCTCCATGAGATGAGACTTCAGCAACTTCAAGTA
CAACCATTTGAAAATGGTGAAGGGATGGTGTTCTTTCCATGGCAGCTTAACACTTTCCTGAAGGATATTG
AGATGAGAAAAAACAGGAGTTTATATTGGAGACAGACAATAGATGTGGAATATGACATTCTCAACCTTTG
GAATTTACCAAAGGGGCTTGGACTAAAAGTGAAAGTAGGATCCTTTTCTGCAAATGCTCCCCAAGGCCAA
CAGTTGTCCTTATCTGAGCAGATGATACAATGGCCAGCAATATTTTCAGAGATCCCTCAATCTGTGTGTA
GTGAGAGTTGTCAGTCTGGATTCAGGAAAGTAAGCCAGGAGGGCAAGGCCATCTGCTGCTACAATTGCAC
TCCTTGTGCAGAGAATGAGATTTCAAATGAGACAGATGTAGACCAGTGTGTGAAGTGTCCAGAGAGTCAT
TATGCAAATACAGAGAGGAACAACTGCCTCCAAAAATCTGTGAGCTTTCTGGCCTATGATGAACCCCTGG
GGATGGCTCTTGCCAGCATAGCTTTGTGCTTATCTACAATCACTGTCTTTGTTATTGGCATCTTCTTAAG
ACACAGAGACACTCCTATTGTCAAGGCCAATAATCAAGGTCTGAGTTTCATTTTGCTCATCACACTCACC
TTCTGTTTTCTATGTTCTTTGAACTTCATTGGTCAGCCAAATACATCAGCCTGCATCCTTCAGCAGACCA
CCTTTGCAGTTGCTTTCACTATGGCTCTTGCCACTGTGTTGGCCAAAGCTATTACTGTGGTTCTTGCCTT
TAAGGTCAGTTTTCCAGGGAGAATGGTAAGATGGCTAATGATATCAAGGGGTCCAAACTACATCATTCCT
ATCTGCACCCTGATCCAACTTCTTCTTTGTGGAATATGGATGGCAACTTATCCACCATTCATTGACCAAG
ATGCTCATACTGAACATGGACACATCATCCTTTTGTGCAACAAGGGCTCAGCTGTTGCCTTCCATTCGGT
CCTGGGATACCTCTGTTTCTTGGCCCTCGGGAGTTATACCATGGCCTTCTTGTCTAGAAATTTGCCTGAT
ACATTCAACGAATCCAAATTTCTGTCATTCAGTATGCTAGTGTTCTTCTGTGTCTGGGTCACCTTTCTTC
CTGTCTACCACAGCACTAACGGAAAGGTCCTGGTGGCTATGGAAGTATTCTCTATCTTGGCTTCCAGCTC
AGCACTCCTTGCCTTCATATTTGGTCCAAAGTGTTACATTATCTTGTTGAGACCAGACAAGAATTCATTT
AATCATATCAGGAGAAAACAACATACAAGAAGGAAGAATTCTCCTAAAATATAG

Translation (857 aa):
MFSWIFIFWLLQIPKLVSAFTFKISRCYYIITEEFHHEGDFMIGAFFPLHTFYTEKKMPHSTIPYTYLDG
YVQYNFKNYQYILALQFAIEEINGNPNLLPNISLGFDFYNVRFTEKDTLMNAGIWLTSHVHKMVFPNYTC
GKKKFTAALTGSSWMASAQIGTLLHLFKFPQITFGPYDPLLSDHSQYSSLYQMAPQDTSLTLAIVSLIVH
FRWLWVGLILPDDHKGNKILSDFREEMERKRICMAFVKMIPATWTSYFAKFWKNMDETNVIIIYGDIDSL
EGLMRNIGQRLLTWIVWVMNTEHHVLEISDYFMLDSFHGSLIFKHHYRENSDFTKFIQTVNPKNYPEDIY
LPKLWYYFFKCSFSDINCHVLDNCQTNASLDVLPSHIFDVAMTEESTSIYNGVYALAHSLHEMRLQQLQV
QPFENGEGMVFFPWQLNTFLKDIEMRKNRSLYWRQTIDVEYDILNLWNLPKGLGLKVKVGSFSANAPQGQ
QLSLSEQMIQWPAIFSEIPQSVCSESCQSGFRKVSQEGKAICCYNCTPCAENEISNETDVDQCVKCPESH
YANTERNNCLQKSVSFLAYDEPLGMALASIALCLSTITVFVIGIFLRHRDTPIVKANNQGLSFILLITLT
FCFLCSLNFIGQPNTSACILQQTTFAVAFTMALATVLAKAITVVLAFKVSFPGRMVRWLMISRGPNYIIP
ICTLIQLLLCGIWMATYPPFIDQDAHTEHGHIILLCNKGSAVAFHSVLGYLCFLALGSYTMAFLSRNLPD
TFNESKFLSFSMLVFFCVWVTFLPVYHSTNGKVLVAMEVFSILASSSALLAFIFGPKCYIILLRPDKNSF
NHIRRKQHTRRKNSPKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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