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Report for CCDS49975.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49975.1 Reviewed, update pending Mus musculus 17 Vmn2r97 23 108 98 CCDS HistoryNCBI Gene:627367Re-query CCDS DB by CCDS ID:49975.1Re-query CCDS DB by GeneID:627367See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 49975.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168710.2 ENSMUSP00000129313.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168710.2Link to Ensembl Protein Viewer:ENSMUSP00000129313.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168710Re-query CCDS DB by Protein ID:ENSMUSP00000129313
Original member NCBI NM_001104549.1 NP_001098019.1 Removed not alive Link to Nucleotide Sequence:NM_001104549.1Link to Protein Sequence:NP_001098019.1Re-query CCDS DB by Nucleotide ID:NM_001104549Re-query CCDS DB by Protein ID:NP_001098019Link to BLAST:NP_001098019.1
Current member NCBI NM_001385078.1 NP_001372007.1 Pending alive Link to Nucleotide Sequence:NM_001385078.1Link to Protein Sequence:NP_001372007.1Re-query CCDS DB by Nucleotide ID:NM_001385078Re-query CCDS DB by Protein ID:NP_001372007Link to BLAST:NP_001372007.1

Chromosomal Locations for CCDS 49975.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 18914322 18914539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18928063 18928357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18928865 18929695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18930237 18930425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18940138 18940261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18947143 18948071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2586 nt):
ATGTTCTCTCGGATTTTTATCTTCAGACTCCTGCAAATTTCCAATTTTTTCTCTGCTTTTTCCTATAACA
TCAGTACATGTTATTACAAAATCTCTGAAGAATTTCACCGTGAAGGGGATGTTGTAATTGGTGCATTTTT
CCCACTTCACACATTTTACTCTTTGAAGAAAATGCAACATTCAACTATCCCATATTACTATTTGGACAAT
GTCATACAGTATAACTTTAAGAACTACCAGTATATTCTCGCTCTGCAATTTGCCATTGAGGAGATCAATG
GGAACCCCAATCTTTTACCCAACATATCTCTTGGGTTTGATTTCTACAATGTCAGATTCACTGGGAAGTA
TATTCATAGTAATACTTTTAATTGGCTCACAGCTCTTGGTGACGGAAATTATATACCTAATTACAATTGT
AAAAAAAGAAATTTCACAGCTGCACTCACAGGAACATCATGGATAACATCTGCCCAAATTGGGACATTGC
TTCAACTCTTTAAATTTCCACAGATTAGTTTTGGACCTTATGATCTTCTCCTGAGTGACCGTGGTCAATA
TCCTTATCTCTACCAGATGGCCCCCAAAGACACATCTCTGCCACTTGCCATTGTTTCATTGATTGTACAT
TTTAGGTGGTCATGGGTTGGTCTCATCCTTCCCGATGACCACAAAGGAAATAAAATTCTATCAGATTTTA
GGGAGGAGATGGAGAGAAATGGCATCTGCCTAGCTTTTGTAAAAATGACCTCAGAAACATGGACTTCATA
TGTTGCCAAATTCTGGGAAAATATGCATGAGACTAATGTAACAATTATTTATGGTGAGAATGATTCATTG
GAAGGTATAATTAGGAATATTGAGCAAAGGTTATTGACATGGAATGTCTGGATCATGAACATTGAACATC
ATGTTATTGACAGAGCTGATTATTTCATGTTAGACTCATTCCATGGGAGCCTCATTTTTAAGCACAATTA
TAGAGAGAATTTTGAATTTACCAAATTTATTCAAACAGTTAATCCCAATAAATACCCAGAAGATATTTAT
CTTCCTAAGCTGTGGTATTTGTTCTTCAAGTGCTCATTTTCTGACACTAATTGTCATGTGTTGGAAAACT
GTCAAACCAATGCTTCTTTGGATGTATTCCCTCGTCACATATTTGATGTGGCCATGAATGCAGAAAGCAC
AATTATTTACAATGGTGTGTATGCTGTGGCTCACAGCCTCCATGAGATGAGACTTCAGCAACTTCAAATG
CAAACATATGAAAATCATCATGGGATAGTGTTATTTCCATGGCAGGTAATAACCTTTCTACTATATTTTA
TTGTCAGCACTCTGGTGAAAGACAAAAGGAGTTTAGATTGGAGACAGATAAGAGATACAGAGTATGACAT
TCTTAACATTTGGAATTTGCCAAAGGGTCTTGGATTAAAAGTGAAAATAGGATCTTTTTCTGCAAATGCT
CCCCAGGGTCAACAGTTGTCTTTATCTGAACAGATGATACAATGGCCAACAATATTTTCAGAGATCCCTC
AGTCAGTGTGCAGTGAGAGTTGTGGGCCTGGATTCAGGAAAGTAACCCTGGAGGGCAAGGCCATCTGCTG
CTACAAGTGCACTCCTTGTGCAGACAATGAGATTTCTAATGAGACAGATGTAGACAAGTGTGTGAAGTGT
CAAGAGAGACATTATGCAAATAGAGAGAAGAGCAACTGCTTCCAAAAATCTGTGAGCTTTCTGGCCTATG
AAGACCCCTTGGGGATGGTATTAGCAAGCATAGCTATTTGCTTATCTGCACTTACTGTGTTTGTTATTGG
CATCTTTATGAAGCACAGAGACACTCCTATTGTCAAGGCAAATAATCGAGCTCTGAGTTATATTTTGCTC
ATCACACTCACATTTTGTTTCTTATGTTCTTTGAACTTCATTGGTAAGCCAACCACAGCTTCCTGCATCC
TCCAGCAGACCACATTTGCAGTTGCTTTCACTATGGCTCTTGCTACTGTGTTGGCCAAAGCTATCACTGT
GGTCCTTGCCTTTAAGGTCAGTTTTCCAGGGAGAATGGTAAGGTGGCTAATGATATCAAGAGGGCCAAAC
TACATCATTCCTATATGCACCCTGATCCAACTTCTTATTTGTGGAATATGGATGGCAACATCCCCACCAT
TCATTGACCAAGATGCTCATACTGAATATGGACACATCATCATTTTATGCAACAAGGGCTCAGCTGTTGC
CTTCCATTCAGTCCTGGGATACCTCTGCTTGATGGCCCTTGGGAGTTATGCTATGGCCTTCTTGTCTAGA
AATTTGCCAGATACATTCAATGAATCCAAATTTCTGTCATTCAGTATGCTGGTGTTCTTCTGTGTCTGGG
TCACCTTTCTTCCTGTCTACCACAGCACTAAAGGGAAGGTCATGGTAGCCATGGAAGTATTCTCTATCTT
GGCTTCCAGCACAGCACTCCTTATCTTCATATTTGGTCCCAAGTGTTACATTATCTTGTTGAGACCAGAC
AAGAATTCATTTAATCATATCAGGAAGAAAACACCCACTAGAAAGAAGAATTTTCCTAAAATATAG

Translation (861 aa):
MFSRIFIFRLLQISNFFSAFSYNISTCYYKISEEFHREGDVVIGAFFPLHTFYSLKKMQHSTIPYYYLDN
VIQYNFKNYQYILALQFAIEEINGNPNLLPNISLGFDFYNVRFTGKYIHSNTFNWLTALGDGNYIPNYNC
KKRNFTAALTGTSWITSAQIGTLLQLFKFPQISFGPYDLLLSDRGQYPYLYQMAPKDTSLPLAIVSLIVH
FRWSWVGLILPDDHKGNKILSDFREEMERNGICLAFVKMTSETWTSYVAKFWENMHETNVTIIYGENDSL
EGIIRNIEQRLLTWNVWIMNIEHHVIDRADYFMLDSFHGSLIFKHNYRENFEFTKFIQTVNPNKYPEDIY
LPKLWYLFFKCSFSDTNCHVLENCQTNASLDVFPRHIFDVAMNAESTIIYNGVYAVAHSLHEMRLQQLQM
QTYENHHGIVLFPWQVITFLLYFIVSTLVKDKRSLDWRQIRDTEYDILNIWNLPKGLGLKVKIGSFSANA
PQGQQLSLSEQMIQWPTIFSEIPQSVCSESCGPGFRKVTLEGKAICCYKCTPCADNEISNETDVDKCVKC
QERHYANREKSNCFQKSVSFLAYEDPLGMVLASIAICLSALTVFVIGIFMKHRDTPIVKANNRALSYILL
ITLTFCFLCSLNFIGKPTTASCILQQTTFAVAFTMALATVLAKAITVVLAFKVSFPGRMVRWLMISRGPN
YIIPICTLIQLLICGIWMATSPPFIDQDAHTEYGHIIILCNKGSAVAFHSVLGYLCLMALGSYAMAFLSR
NLPDTFNESKFLSFSMLVFFCVWVTFLPVYHSTKGKVMVAMEVFSILASSTALLIFIFGPKCYIILLRPD
KNSFNHIRKKTPTRKKNFPKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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