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Report for CCDS49986.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49986.1 Public Mus musculus 17 Vmn2r108 23 108 98 CCDS HistoryNCBI Gene:627805Re-query CCDS DB by CCDS ID:49986.1Re-query CCDS DB by GeneID:627805See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49986.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167314.2 ENSMUSP00000130373.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167314.2Link to Ensembl Protein Viewer:ENSMUSP00000130373.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167314Re-query CCDS DB by Protein ID:ENSMUSP00000130373
Original member Current member NCBI NM_001104570.1 NP_001098040.1 Accepted alive Link to Nucleotide Sequence:NM_001104570.1Link to Protein Sequence:NP_001098040.1Re-query CCDS DB by Nucleotide ID:NM_001104570Re-query CCDS DB by Protein ID:NP_001098040Link to BLAST:NP_001098040.1

Chromosomal Locations for CCDS 49986.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 20462373 20463292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20469044 20469167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20470045 20470260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20470952 20471743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20472077 20472371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 20481016 20481236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2568 nt):
ATGTTCTCTTGTATTTTTATCTCCTCACTACTTCTGATTGCCAAATTTGTCCTTACCTTTATGCATGTTA
ATATCAGTAAATGTTTTTACAAAATTACTGAGGATTTTCATCATGAAGGAGATGTGGTGATTGGTGCATT
TTTCCCTCTTCATACGTACTATACGAAGAATAAAATTCCACATTCTTATCTACCATATTATTATAAGGAC
AATTACCTCCAATATAATTTTAAGAACTACCAGTATATTCTGGCTTTGGTGTTTGCTATTGAGGAGATCA
ATGATAATCCCAATCTTTTACCTAATATATCTCTTGGATTTGATTTCTACAATGTCAGATTCATTGAGAA
GGACACTCTTATGAATGTCTGTTTTTGGCTCACTGGTCAAGGGCAGAAAAATATTTTACCAAATTACAAT
TGCGGCAAAAGTAATTTTGCTACTGCTCTCACAGGAACAGCATGGACAACGTCTGCCCAAATTGGTACAT
TGCTTCAACTCTTTAAATTTCCTCAGCTTTCTTTTGGACCTTATGATTCCATCTTGAGTGACCGTGGACA
ATATTCTTCTCTCTATCAGATGGCCTCCAAGTACACATCTATTTCACTTGGCATTGTATCTTTGATGGTT
CATTTTAGGTGGTCTTGGGTTGGTCTCATCCTTCCAGATAACCACAAAGGAAATAAAATTTTATCAGAGT
TCAGAGAAGATATGGAGAGAAAAGGAGTCTGCATAGCTTTTGTGAAAATGATCCCTATGACATGGAATGC
ATATTATAACAAATTCTGGGAAAATATGGATGAGACAAATGTTATAATTATTTATGGTGACATTGATTCT
CTCACAGGTCTAATGCGAAATATTGGGCAAAGATTGTTGACAGCAAAAGTCTGGATCATGAACACTGAAC
CTCATATTACTGACTATGCTGACTATTTCATGCTTGACTCATTCCATGGTAGCTTAATTTTTACACACAA
TTATAGAAAGAGTTTTAAGATTTCTAATTTTATTCAAACAGTTAATCCTTACAAATACCCTGAAGACATT
TACCTTCCTAAGTTATGGCATTTGTTCTTCAAATGCTCATTTTCTGATGTTGATTGTCGACTTTTGGCTA
ACTGTCAACCCAATGCTTCTCTGGATGTGTTACCTAGTCATATATTGGACATGGTAATTAGTGAAGAAAG
CAATAATATCTATAATGCTGTGTATGCTGTGGCTCACAGTCTCCATCAGATGCATCTTCAAGAAGTACAA
ATAAAACCACATGAAAATGGGGAAGCAATAGCCTTCTTCCCCTGGCAGCTTAACATTTTCCTGAAGGACA
TCAATGAGAGAGACAATATGAGTTTCGGTGGGAGACAGAAATTAAATGCAGAATATGACATTCTTAACCT
TTGGAATTTACCAAAGGGTCTTGGACAAAAGGTGAAAATAGGATCCTTTTCAGCAAATGCTCCTGAGGGC
CAACAGTTGTCTTTATCTGAACAGATGATACAATGGGCAGAAGGATTCTCAGAGATCCCTCAATCTGTGT
GCAGTGAGAGTTGTGGGCCTGGATTCAGAAAAGTAACCCTGGAGGGCAAGGCCATCTGCTGCTACAATTG
CACTCCCTGTGCAGATAATGAGATTTCTAATGAGACAGATGTGGATCAATGTGTCAAGTGTCCAGAGAGT
CATTATTCAAATACAGAGAAGAACCACTGTTTACAGAAAACTGTGATCTTTCTGGCCTATGAAGACCCCT
TGGGGATGACACTGGCCTGTATAGCTTTGTGTTTATCTGCACTCACAGCCTTTGTAATTGGGGTCTTTGT
GAAATACAGAGACACTCCCATTGTGAAAGCCAATAATAGAGGTCTCAGTTACACTTTGCTCATCACAATC
ACCTTCTGTTTACTCTGTTCTTTGAACTTCATTGGTCAACCCAATACAGCCTCCTGCATCCTTCAGCAGA
ACATATTTGGAGTTGCATTCACTGTGGCTCTAGCTACCGTGTTGGCCAAAGCTATTACTGTGGTCCTTGC
CTTCAAGGCCACTTTTCCAGGGAGAATGGTGAGGTGGTTAATGACATCAAGAGCTCCAAACTATATAATT
CCTCTTTGTACGCTGATCCAACTTTTTATTTGTGGAATATGGATGACAATGTCGCCTCCATTCATTCACC
AAGACAATCATGCTGAACATGGACACATCTTACTTTTGTGTAACAAGGGATCATCTGTTGCTTTCCACTG
TGTTCTGGGATACCTATGCTCCTTGGCTTTTGGGGGATACACCATGGCATTCTTATCTAGAAATCTGCCT
GATACATTCAATGAATCCAAATTTCTCTCATTCAGCATGGTGGTGTTCTTCTGTGTATGGGTCACCTTTC
TTCCTGTCTACCATAGCACTAAAGGGAAGGTCATGGTGGCTGTGGAAGTCTTCTCTATCTTGGCTTCCAG
TACAGCCCTCCTTGGCTTCATATTTGCCCCTAAGTGTTACATTATCTTATTTAGACCAGAGAAGAATTCA
TTTCATCGTATCAAGGACAAAACATATTCTAGATGGAATAAAATATAG

Translation (855 aa):
MFSCIFISSLLLIAKFVLTFMHVNISKCFYKITEDFHHEGDVVIGAFFPLHTYYTKNKIPHSYLPYYYKD
NYLQYNFKNYQYILALVFAIEEINDNPNLLPNISLGFDFYNVRFIEKDTLMNVCFWLTGQGQKNILPNYN
CGKSNFATALTGTAWTTSAQIGTLLQLFKFPQLSFGPYDSILSDRGQYSSLYQMASKYTSISLGIVSLMV
HFRWSWVGLILPDNHKGNKILSEFREDMERKGVCIAFVKMIPMTWNAYYNKFWENMDETNVIIIYGDIDS
LTGLMRNIGQRLLTAKVWIMNTEPHITDYADYFMLDSFHGSLIFTHNYRKSFKISNFIQTVNPYKYPEDI
YLPKLWHLFFKCSFSDVDCRLLANCQPNASLDVLPSHILDMVISEESNNIYNAVYAVAHSLHQMHLQEVQ
IKPHENGEAIAFFPWQLNIFLKDINERDNMSFGGRQKLNAEYDILNLWNLPKGLGQKVKIGSFSANAPEG
QQLSLSEQMIQWAEGFSEIPQSVCSESCGPGFRKVTLEGKAICCYNCTPCADNEISNETDVDQCVKCPES
HYSNTEKNHCLQKTVIFLAYEDPLGMTLACIALCLSALTAFVIGVFVKYRDTPIVKANNRGLSYTLLITI
TFCLLCSLNFIGQPNTASCILQQNIFGVAFTVALATVLAKAITVVLAFKATFPGRMVRWLMTSRAPNYII
PLCTLIQLFICGIWMTMSPPFIHQDNHAEHGHILLLCNKGSSVAFHCVLGYLCSLAFGGYTMAFLSRNLP
DTFNESKFLSFSMVVFFCVWVTFLPVYHSTKGKVMVAVEVFSILASSTALLGFIFAPKCYIILFRPEKNS
FHRIKDKTYSRWNKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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