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Report for CCDS49996.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49996.1 Public Mus musculus 17 Zfp820 23 108 98 CCDS HistoryNCBI Gene:75424Re-query CCDS DB by CCDS ID:49996.1Re-query CCDS DB by GeneID:75424See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49996.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084141.5 ENSMUSP00000081158.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084141.5Link to Ensembl Protein Viewer:ENSMUSP00000081158.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000084141Re-query CCDS DB by Protein ID:ENSMUSP00000081158
Original member Current member NCBI NM_029281.2 NP_083557.2 Accepted alive Link to Nucleotide Sequence:NM_029281.2Link to Protein Sequence:NP_083557.2Re-query CCDS DB by Nucleotide ID:NM_029281Re-query CCDS DB by Protein ID:NP_083557Link to BLAST:NP_083557.2

Chromosomal Locations for CCDS 49996.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 21818696 21820188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 21821070 21821196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 21823844 21823873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1650 nt):
ATGAATGCTTCTCTCCTAAATGTTCCTCAGGGTCAGTTAACATTCAAGGATGTGGCAGTGGACTTCTCAC
AGGAGGAATGGGAATGTCTTGATTGTGCTCAGAGGGCACTGTACATGGATGTGATGTTGGAGAATTACAA
TAATCTGTTTTTTGTGGAGACCCATGGGATGTGTCCTAAATATAAGAACATCTTGGATCAAGACCTTCAG
CATATTGTCCATGAGCATGTGAATATCCAAGTGAAATCTTATAAATGTCATGAGCTTGGCAAAATCATTC
ATGAATCCACCCAAAGTACACCTTATAAAACTAACCTCAGGGCTACATCTGTTGAATCATCAAACCTAAG
CAGACATGAAACTGAAAACAACAGAGAACCTTGCAAATCTAAAAGCCCTGTTAACTGTTTAAATTTGTTC
TCTACCATTAGTTTAACTCAGGGAATCCACAGAAGAAAAAAAGAATACTATGGTACAGAGCTTGTTAAGG
TTTTTGACTCTAAACAAAAACTCAAGCTGAAGCAAACCAATAATAGAGAAAAACCTTACAAATGTAGTGA
ATGTGACAAATGTTTCACCAAGAAATGCAAGCTTAGACAACATCAGAGAATTCATACAGGAGAGAAACCT
TACAAATGTAGTGAATGTGACAAATGCTTTACCCAAAAAGACAGACTTATTATTCATCAGAGAGTTCATA
CAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAAGGCTTTACCAGCAAAAGCCGTCTTAATATTCA
TCAGAGAGTTCATACAGGAGAGAAATCATACAAATGCAGTGAATGTGACAAATCTTTTTCTCAGCAAGGC
AATCTTAGTATTCATCTGCGAATTCATACAGGAGAAAAACCTTACAAATGTAGTGAATGTGACAAATGCT
TTACCTACAAAAGTGGCCTTAGAAGTCATCAGATTATCCACACAGGAGAGAAAGCTTACAAATGTAGTGA
ATGTGGCAAATGCTTTACCCACAAAGGTGATCTTAGAAGACATCAGAGCATTCATATGGGAGAAAAACCT
TACAAATGTAGTGAATGTGACAAAGGCTTTACTCAAAAATGCCGTCTTATCATTCATCAGATAATTCATA
CAGGAAAGAAAGGTTACAAATGTAGTGAATGTGACAAATGCTTTATTCTCAAAAGTGATCTTAGTATTCA
TCAGAGAATTCATACAGGAGAGAAACCTTACGAATGTAGTGAATGTGGCAAAGGCTTTACCAGCAAAAGC
CGTCTTAATATTCATCAGAGAGTTCATACAGGAGAGAAATCATACAAATGCAGTGAATGTGACAAATCTT
TTACTCAGCAAGGCAATCTTAGAATTCATCTGCGAATTCATACAGGAGAAAAACCTTACAAATGTAGTGA
ATGTGACAAATGCTTTACCTACAAAAGTGGCCTTAGAAGTCATCAGATTATCCACACAGGAGAGAAAGCT
TACAAATGTAGTGAATGTGGCAAATGCTTTACCCACAAAGGTGATCTTAGAAGACATCAGAGCGTTCATA
TGGGAGAAAAACCTTACAAATGTAGTGAATGTGACAAAGGCTTTACTCAAAAAATGCCGTCTTATCATTC
ATCAGATAATTCATACAGGAAAGAAAGGTTACAAATGTAG

Translation (549 aa):
MNASLLNVPQGQLTFKDVAVDFSQEEWECLDCAQRALYMDVMLENYNNLFFVETHGMCPKYKNILDQDLQ
HIVHEHVNIQVKSYKCHELGKIIHESTQSTPYKTNLRATSVESSNLSRHETENNREPCKSKSPVNCLNLF
STISLTQGIHRRKKEYYGTELVKVFDSKQKLKLKQTNNREKPYKCSECDKCFTKKCKLRQHQRIHTGEKP
YKCSECDKCFTQKDRLIIHQRVHTGEKPYKCSECDKGFTSKSRLNIHQRVHTGEKSYKCSECDKSFSQQG
NLSIHLRIHTGEKPYKCSECDKCFTYKSGLRSHQIIHTGEKAYKCSECGKCFTHKGDLRRHQSIHMGEKP
YKCSECDKGFTQKCRLIIHQIIHTGKKGYKCSECDKCFILKSDLSIHQRIHTGEKPYECSECGKGFTSKS
RLNIHQRVHTGEKSYKCSECDKSFTQQGNLRIHLRIHTGEKPYKCSECDKCFTYKSGLRSHQIIHTGEKA
YKCSECGKCFTHKGDLRRHQSVHMGEKPYKCSECDKGFTQKMPSYHSSDNSYRKERLQM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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