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Report for CCDS50001.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50001.1 Public Mus musculus 17 Zfp946 23 108 98 CCDS HistoryNCBI Gene:74149Re-query CCDS DB by CCDS ID:50001.1Re-query CCDS DB by GeneID:74149See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50001.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088763.12 ENSMUSP00000086141.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088763.12Link to Ensembl Protein Viewer:ENSMUSP00000086141.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000088763Re-query CCDS DB by Protein ID:ENSMUSP00000086141
Original member Current member EBI ENSMUST00000120222.7 ENSMUSP00000113244.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120222.7Link to Ensembl Protein Viewer:ENSMUSP00000113244.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120222Re-query CCDS DB by Protein ID:ENSMUSP00000113244
Original member Current member EBI ENSMUST00000167740.1 ENSMUSP00000132940.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167740.1Link to Ensembl Protein Viewer:ENSMUSP00000132940.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167740Re-query CCDS DB by Protein ID:ENSMUSP00000132940
Original member Current member NCBI NM_001331197.1 NP_001318126.1 Accepted alive Link to Nucleotide Sequence:NM_001331197.1Link to Protein Sequence:NP_001318126.1Re-query CCDS DB by Nucleotide ID:NM_001331197Re-query CCDS DB by Protein ID:NP_001318126Link to BLAST:NP_001318126.1
Original member Current member NCBI NM_001331198.1 NP_001318127.1 Accepted alive Link to Nucleotide Sequence:NM_001331198.1Link to Protein Sequence:NP_001318127.1Re-query CCDS DB by Nucleotide ID:NM_001331198Re-query CCDS DB by Protein ID:NP_001318127Link to BLAST:NP_001318127.1
Original member Current member NCBI NM_198003.3 NP_932120.1 Accepted alive Link to Nucleotide Sequence:NM_198003.3Link to Protein Sequence:NP_932120.1Re-query CCDS DB by Nucleotide ID:NM_198003Re-query CCDS DB by Protein ID:NP_932120Link to BLAST:NP_932120.1

Chromosomal Locations for CCDS 50001.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 22451123 22451152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 22453452 22453578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 22454424 22455838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGACTGCTTCTCTGCTAAATGTTTCCAAGGATCTGTTAAGATTCAAGGACGTGGCTGTGGAATTCTCAC
AGGAGGAATGGGAATGTCTTGACTGTGCTCAGAGGGCATTGTACATGGATGTGATGCTGGAGAATTACAA
CAATCTATTTTTTGTGGTTTTTTCAGAAAATGATCATATATGTTACAAATATAAGAATGTCTTGGATGAA
GACGCACAGCAAATTGTCCACCAGCATTTGAATATCCAAGAGAAGTCTTATAAATGCCATGAGCTTGCTA
AAATCACCCATGCATCCACCCAAAATAGTCCTTATAAAATTAACCTCAGAGATACAACTGTTGAATCATC
AAAGCTAAACAGACATAGAACTGGAAACATCAGAGAACCTTGTAAATATAAAAATTGTGTAAACTGTTTA
AGTGTGTGTTCTATCATTAGTCTAAATCAAGGAATCCACATAAATAAGAAAGAACACAATGGTACAGAGT
TTGATAAGATTTTTGAGTCTAAAGAAAAACGCATGCTGAAACCAACCAATAGTGGAAAGAAACCTTACAA
ATGTAGTGAATGTGAGGAATGCTTCACCCAGCTATGCGATCTTAAAAGTCATCAGCGAAATCATATAGGA
GAGAAACTTTGCAAAAGTAGTGAACATGACAACTGTTTTGCCCTCAAAAGTGATCTTAGAATTCATCAGC
CAGTTCATACAAGAGGGAAACCTTACAAATGTAATGAATGTATCAAATCTTTTACCCAGAAATCCAGTTT
AAAAAGACATCAGAGAATTCATACAGGAGAAAAACCTTACAAATGTAGTGAATGCAACAAATGCTTTTCC
CATAAATACATTCTTATTATTCATCAGAAAATTCATACAGGAGAGAAACCTTACAAATGTAATGCATGTG
GCAAATGCTTTACCCTGAAAGGAGAGCTTAGAATTCATCAGAGAATTCATACAGGAGAGAAACCTTACAA
ATGTAGTGAATGTGACAAATCTTTTACCCAGAAAGGCCAACTTATAATTCATCAGAGAATTCATACCGGA
GAGAAACCCTACAAATGTAGTGAATGTGACAAATGCTTTATCAAAAAATACAGTCTTGTAACTCATCAGA
GAATGCATACAGGAGAGAATCCTTACAAATGTAGTGAATGTGACAAATGCTTTACCCTCAAAAGTGGTCT
TAGAATTCATGAGAGAATTCACACAGGAGAAAAACCTTACAAATGTAGTGAATGTGACAAGTCTTTTATC
AAAAAAATCTATCTTAGAATTCATCAGAGTGTTCATATAGGAGAGAAACTTTACAAATGTAGTGAATGTG
ACAAATGCTTTATGCACAAATGCAGCCTTAGTAGTCATCAGAGACTTCATACAGGAGAGAAACCTTACAA
ATGTAGTATATGTGACAAATGCTTTACCAGCAAAGGCTATCTTGGAAGTCATCAGAGAATTCATACAGGA
GAGAAACCTTACCAATGTAGTGAATGTGACAAATGCTTTACCCACAAAGGCAGTCTTAAAAGACATGAGA
GAATTCATACAGGAGTGAAACTTTACAAATGA

Translation (523 aa):
MTASLLNVSKDLLRFKDVAVEFSQEEWECLDCAQRALYMDVMLENYNNLFFVVFSENDHICYKYKNVLDE
DAQQIVHQHLNIQEKSYKCHELAKITHASTQNSPYKINLRDTTVESSKLNRHRTGNIREPCKYKNCVNCL
SVCSIISLNQGIHINKKEHNGTEFDKIFESKEKRMLKPTNSGKKPYKCSECEECFTQLCDLKSHQRNHIG
EKLCKSSEHDNCFALKSDLRIHQPVHTRGKPYKCNECIKSFTQKSSLKRHQRIHTGEKPYKCSECNKCFS
HKYILIIHQKIHTGEKPYKCNACGKCFTLKGELRIHQRIHTGEKPYKCSECDKSFTQKGQLIIHQRIHTG
EKPYKCSECDKCFIKKYSLVTHQRMHTGENPYKCSECDKCFTLKSGLRIHERIHTGEKPYKCSECDKSFI
KKIYLRIHQSVHIGEKLYKCSECDKCFMHKCSLSSHQRLHTGEKPYKCSICDKCFTSKGYLGSHQRIHTG
EKPYQCSECDKCFTHKGSLKRHERIHTGVKLYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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