NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50034.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50034.1 Public Mus musculus 17 Ciao3 23 108 98 CCDS HistoryNCBI Gene:67563Re-query CCDS DB by CCDS ID:50034.1Re-query CCDS DB by GeneID:67563See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50034.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002350.10 ENSMUSP00000002350.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002350.10Link to Ensembl Protein Viewer:ENSMUSP00000002350.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000002350Re-query CCDS DB by Protein ID:ENSMUSP00000002350
Original member Current member NCBI NM_026238.4 NP_080514.3 Accepted alive Link to Nucleotide Sequence:NM_026238.4Link to Protein Sequence:NP_080514.3Re-query CCDS DB by Nucleotide ID:NM_026238Re-query CCDS DB by Protein ID:NP_080514Link to BLAST:NP_080514.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080514.3 476 Q7TMW6-1 476 100% 0 0

Chromosomal Locations for CCDS 50034.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25773822 25773887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25775046 25775141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25776966 25777109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25777325 25777457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25778950 25779084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25779498 25779616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25780307 25780436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25780880 25780952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25781241 25781378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25781688 25781845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25782016 25782254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGGCGTCGCCCTTCAGTGGGGCACTACAGCTGACCGACTTGGACGACTTCATCGGGCCATCTCAGAATT
GCATCAAGCCTGTAAAGGTGGCTAAGAAGCCAGGAAGTGGCATAGCCAAGATCCACATTGAAGACGATGG
CAGTTACTTCCAAGTGAACCAAGACGGAAGAACCCAGAAGCTGGAGAAGGCCAAGGTCTCCCTGAATGAC
TGCCTGGCGTGCAGCGGCTGTGTCACCTCAGCAGAGACAGTACTCATCACCCAGCAGAGTCACGAGGAAC
TGCGGAAGGTTCTAGATGCTAATAAGGAGGCAGCACCTGGTCAGCAGCGGCTGGTGGTCGTTTCCATATC
GCCGCAGTCCAGAGCATCACTGGCTGCCAGGTTTCGGCTGGACCCCACAGACACTGCCAGGAAATTAACT
TCATTCTTCAAAAAAATAGGGGTCCACTTTGTCTTTGATACTGCCTTCGCGAGGAACTTCAGCCTTTTGG
AAAGCCAAAAAGAGTTTGTGCAGCGCTTCCGAGAGCAAGCCAACTCCAGAGAGGCCTTGCCTGTGCTGGC
TTCCGCCTGCCCAGGCTGGATCTGCTATGCTGAGAAGACACATGGCAACTTCATCCTCCCCTACATCAGT
ACAGCCCGGTCCCCACAGCAGGTTATGGGCTCCCTGGTCAAAGACTTCTTCGCACAACAGCAGCTTCTGA
CTCCTGACAAGATCTACCATGTAACAGTGATGCCCTGCTATGATAAAAAGCTAGAAGCATCCAGACCTGA
CTTCTTCAACCAGGAGTACCAGACCCGTGATGTGGACTGTGTCCTTACAACAGGAGAAGTCTTCAGGCTG
CTGGAGGAAGAAGGAGTCTCCCTCACGGAGCTGGAGCCTGCGCCCCTGGATGGCTTAACCAGTAGTGTGT
CTGCTGAGGAGCCCAGCAGCCATCGGGGCGGAGGCTCAGGAGGCTACCTGGAGCATGTGTTCCGGCACGC
AGCCCAAGAGCTCTTTGGAATCCACGTGGCTGAAGTCACCTATCAACCCTTGAGGAACAAGGACTTCCAG
GAAGTGACACTGGAAAGGGAAGGCCAGGTACTGTTGCGCTTTGCTGTGGCCTATGGTTTCCGTAATATCC
AGAACCTCGTGCAGAAGTTGAAACGAGGCCGCTGTCCCTACCATTACGTGGAAGTAATGGCCTGCCCTTC
AGGTTGCTTGAATGGAGGGGGCCAGCTCAAGGCTCCGGATACAGAGGGCAGCGAGCTCCTTCAGCAGCTG
GAAAGACTGTACAGCATGGTGAGGACTGAGGCGCCCGAAGATGCACCGGGGGTCCAGGAGCTGTACCAGC
ACTGGCTGCAAGGAGAGGACTCAGAGCGGGCCAGCCGCCTGCTGCACACACAATACCATGCCGTGGAGAA
GCCCAGCTCAGGCCTGAGCATCAGGTGGTAG

Translation (476 aa):
MASPFSGALQLTDLDDFIGPSQNCIKPVKVAKKPGSGIAKIHIEDDGSYFQVNQDGRTQKLEKAKVSLND
CLACSGCVTSAETVLITQQSHEELRKVLDANKEAAPGQQRLVVVSISPQSRASLAARFRLDPTDTARKLT
SFFKKIGVHFVFDTAFARNFSLLESQKEFVQRFREQANSREALPVLASACPGWICYAEKTHGNFILPYIS
TARSPQQVMGSLVKDFFAQQQLLTPDKIYHVTVMPCYDKKLEASRPDFFNQEYQTRDVDCVLTTGEVFRL
LEEEGVSLTELEPAPLDGLTSSVSAEEPSSHRGGGSGGYLEHVFRHAAQELFGIHVAEVTYQPLRNKDFQ
EVTLEREGQVLLRFAVAYGFRNIQNLVQKLKRGRCPYHYVEVMACPSGCLNGGGQLKAPDTEGSELLQQL
ERLYSMVRTEAPEDAPGVQELYQHWLQGEDSERASRLLHTQYHAVEKPSSGLSIRW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH