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Report for CCDS50061.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50061.1 Public Mus musculus 17 Zfp871 23 108 98 CCDS HistoryNCBI Gene:208292Re-query CCDS DB by CCDS ID:50061.1Re-query CCDS DB by GeneID:208292See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50061.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159086.9 ENSMUSP00000127178.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159086.9Link to Ensembl Protein Viewer:ENSMUSP00000127178.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159086Re-query CCDS DB by Protein ID:ENSMUSP00000127178
Original member Current member NCBI NM_172458.3 NP_766046.3 Accepted alive Link to Nucleotide Sequence:NM_172458.3Link to Protein Sequence:NP_766046.3Re-query CCDS DB by Nucleotide ID:NM_172458Re-query CCDS DB by Protein ID:NP_766046Link to BLAST:NP_766046.3

Chromosomal Locations for CCDS 50061.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 32774352 32776008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32777157 32777217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32777401 32777527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32788138 32788140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1848 nt):
ATGGAGTCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCTCCCTGGAGGAGTGGGCTATGTTGAATCCAT
CCCAGAAGAACCTCTACAAAGATGTGATGCAGGAAACCTTGAGGAACCTGGCTTCTATAGGGAGCAGTTT
GGAGCACCATATCATTGAAAATATATACCGAAACTCCTGGAAAAAACTAAGTGGTCAAGTGGTGGAGGGA
CTCTATGACTGTAAAGATGACCATCAATGTGCAGAAATCTTCGACTTCACTACACACAGTATTGTAAACC
AGAACTCCTTGCCAGGAGTGTATATATGTGAAAACAGCGGATGTGCAACGGTAGTCATTGGCCATTTATC
TCTAAGTGTACTTCTTAAACCTGACCCAAAGCATGAATCGTGCGAAGATCAGGAATATGGGAAGGAATTA
TACAATATGGAATATGGGGCCCCCTCCAGTTCTCTCACATCATTTGAGAACTATGAAAGTACTTACACTG
TAGAGAGAATCTATAAAACTGAGCGTTGTGACGAAGACTATAGATATGGCCAAAATGTTGAAAAGACTTT
CACTGAAGAAAAGCCCTTTGAGTGTAAGCAGTGTGGGAAGTGTTTCAGTTCCTCCAGGTATTTTCGAAGG
CACGAACGACGTCATCGGGCCAAGAAATGCTATATCTGTAAGCAGTGTGGGAAAGCCTTTGCTTTTCCCA
CTTACCTACAAACACACGAAAGAATTCACACGGGGGAGAAACCGTACGTGTGCTTGCAGTGTGGGAAAAC
CTTCGCTCATTCTCGTTCCCTTAAAACACATAAAAGAACTCACTCGGTTAGGGACCTCTTTGTGTGCAAT
TACTGTGGGAAAACCTTACGTCATTACAGCTCTCTTCAAATTCATACAAGAATTCACACGGGAGAGAAAC
CTTATGTGTGTAAACCGTGTGGTAAAGCCTTCATTACTTACCGCTCCTTTCGAATACATGAAAGAATTCA
CACTGGAGAAACACCTTATGAATGTAAGCAGTGTGGCAACACCTTCATGCGTTGGATTCAGTTGCGAAAG
CATGAAATAATTCACAGTGGGGTGAAGCCCTATGCTTGTAAGCTGTGTGGAAAAAGCTTCACTTGTTCTG
GGTCCTTGAGAACACATGAAAGGATTCACACTGGGGAGAGACCCTATGTGTGTGACCAGTGTGGATATAG
CTTTACTCGGTTAAATTCGCTTTTAAGGCATAAAATAACCCACACCGGTGAGAAGCCCTACGTGTGTAAT
CATTGTGGGAAGACTTTCCCTCGATCTGCGTCTCTTCAAAGACATGTCAAAATTCACACCGAGGAGAAAC
CCTATGTATGCAAACAGTGTGGCGTTGCCTTCCCTAGTTCTGCTGACCTCTTAGAACACGAGCAAACCCA
TATTGACGAGAAACCGTACATATGTGAGCAGTGCGGCAACGCCTTCGTGCTGTGGAGTCAGTTTCAGAAG
CATAAAGCCCTTCACGCCGTCCCAGTGTCCTACGTGTGTAAGCAGTGTGGGAAGAGCTTCACTTCCTCGA
GGTCCCTGAAAACCCACGAGAGAATCCACACGGGTGAGAAGCCTTACGAGTGCAAGCAGTGTGGGAAGAC
CTTCCTGTGGTCCTACTCCCTACAGAGACATGAAAAGACTCACACGGACGGGAAGGTCCACGTGTGTAAG
CAGTGCGGGGAAACTTTCCCTTACGACAGTCATCTCCAGGTGCATGAGAAACTGCACTTTGACGATGAGC
CTTTTAATTGTAAGTACTGTGGGAAGCCCTTCTTCACTCTGAACCATTTGCATAGACATGAATTACTTCA
CACTACCCTGGATTCCAGTGTTTTTTAG

Translation (615 aa):
MESVAFEDVAVNFSLEEWAMLNPSQKNLYKDVMQETLRNLASIGSSLEHHIIENIYRNSWKKLSGQVVEG
LYDCKDDHQCAEIFDFTTHSIVNQNSLPGVYICENSGCATVVIGHLSLSVLLKPDPKHESCEDQEYGKEL
YNMEYGAPSSSLTSFENYESTYTVERIYKTERCDEDYRYGQNVEKTFTEEKPFECKQCGKCFSSSRYFRR
HERRHRAKKCYICKQCGKAFAFPTYLQTHERIHTGEKPYVCLQCGKTFAHSRSLKTHKRTHSVRDLFVCN
YCGKTLRHYSSLQIHTRIHTGEKPYVCKPCGKAFITYRSFRIHERIHTGETPYECKQCGNTFMRWIQLRK
HEIIHSGVKPYACKLCGKSFTCSGSLRTHERIHTGERPYVCDQCGYSFTRLNSLLRHKITHTGEKPYVCN
HCGKTFPRSASLQRHVKIHTEEKPYVCKQCGVAFPSSADLLEHEQTHIDEKPYICEQCGNAFVLWSQFQK
HKALHAVPVSYVCKQCGKSFTSSRSLKTHERIHTGEKPYECKQCGKTFLWSYSLQRHEKTHTDGKVHVCK
QCGETFPYDSHLQVHEKLHFDDEPFNCKYCGKPFFTLNHLHRHELLHTTLDSSVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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