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Report for CCDS50077.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50077.1 Public Mus musculus 17 Btnl4 23 108 98 CCDS HistoryNCBI Gene:632126Re-query CCDS DB by CCDS ID:50077.1Re-query CCDS DB by GeneID:632126See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 50077.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065841.4 ENSMUSP00000064161.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065841.4Link to Ensembl Protein Viewer:ENSMUSP00000064161.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000065841Re-query CCDS DB by Protein ID:ENSMUSP00000064161
Original member NCBI NM_030746.1 NP_109671.1 Updated not alive Link to Nucleotide Sequence:NM_030746.1Link to Protein Sequence:NP_109671.1Re-query CCDS DB by Nucleotide ID:NM_030746Re-query CCDS DB by Protein ID:NP_109671
Current member NCBI NM_030746.2 NP_109671.1 Accepted alive Link to Nucleotide Sequence:NM_030746.2Link to Protein Sequence:NP_109671.1Re-query CCDS DB by Nucleotide ID:NM_030746Re-query CCDS DB by Protein ID:NP_109671Link to BLAST:NP_109671.1

Chromosomal Locations for CCDS 50077.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34469042 34469778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34470061 34470087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34470979 34471005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34472257 34472283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34472366 34472386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34472592 34472792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34472906 34473190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34474004 34474354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34475853 34475937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1761 nt):
ATGGAAAATCACCGCAAGCCCTCTCTGCTCTTCCATGTCCCCTGTCTGTTTGTCCTTACACAGCTGCTTA
GCTGGGTGACCACACAGGAGTTCCGGGTCTTTGGTCCCTCAGACCCCATTGTGGCTGCACCAGGTGGGGA
AGCCATCCTTCCCTGCTCCGTGTTTCCAGCCATGAATGTGGAGAACATGGAAGAGTTGAGGTGGTTCCGC
AGCAGATTCTCAGAAGCAGTACTTTTCTATCGGGACCAAGAGGAGCAGAAGGAAGGGCAGATGCCTGGGT
ATTCACAGCGCACCTTGCTGGTGAAGGACCAGTTCCATCAAGGCACAGCTGCTGTGAGGATCCTAAATGT
CCAGGCATCAGATAGTGGGATATACATCTGCCACTTCCAGCAAGGAGTGTTCTATGATGAGGCCATCTTG
GAACTGAAGGTGGCAGCAATGGGCTCTGTCCCTGAAGTGCACATCAAAGGTCCAGAAGATGGTGGAGTGT
GTGTTGTGTGCATGACCTCAGGGTGGTACCCGGAGCCTCAGGTGCATTGGAAAGACTCCAGAGGAGAGAA
TCTCACAGCATTCTCCTCAGAGACCCACACTAAAGATGCTGAAGGACTGTTCAGCACAGAGACCTTGCTG
GTTGTGAGAGACAGCTCTGTGAGGAATGTGACCTGCTCCATCTTCAATCCTATCTTGGGCCAGGAGAAAG
CCACAGCCATGTTCATCCCAGAGCCCTTCTTCCCTCAGGCCTCTCCCTGGAAGCCAGCTTTTCTTGTGAC
CCTGACCATGATGGGACTACTAGTCTTAGGGACAAGCTATCTTCTCAGAAGGGAGCATTCTGCAAGGCTG
AAGGTGCAGCAGGAAACGGTGAATTTTCAGCGTGAGAAGGATGAGTCACTGAAGACAAGGGATGATGCTC
TGAGGACTGCTGGCGCACTCATGGTGGAGCGTGATCGAAGGAAAGCAGCTTACAGGGCAGCTTGGAAGAA
GGCCCAGCTCTATGCAGATTGGCGCAAGGAGCACTTCGAGGCCTGGACTTTCACTCTGGATCCAGCCTCT
GCCCACCCCATCCTTGCCATCTCCCCAGACAGGCTGAGTGTGAGCCGGAAGGATTCCACTCTGTGCTTGG
ATGACCTCTTCTGTGTGTTAGGCATCAGAGGCATCTCTTCTGGAAGACATTACTGGGAGGTGAAGCTAAG
GAATGGTGACAGCAGCAAGTGGACTCTGGGGGTCTGTAGGGAAGGTGTGGACAGGAAAGGCTGTTTCTCA
GAGTGTCCACATAAGGGGTTTTGGACTGTGGGGCGGTCTAGTAGTGGATATTTGGCTTATATTGACACTG
GGACAGCTTTATTATCTCTCAGGCAAGCTCCGCAGAGTGTGGGGGTGTTTGTGGACTACACTGAAGGTGA
CATCTCCTTCTATAACATGAGTGACATGTCCCCCATGTTCTCCTTCCATGAGGCTTCCTTCTCTGGGACT
CTTTTTCCATACTTCAGGCTTAAGTCTGGAAATGTTTCAATGATTATCCAATCCATGGCATGCGCATCTG
AGGGGAGGGAGGGAGAAGACAGAAGGAGAGGAAGGAAAAGAAGTAGGAAGGGGAGGAAGGGGAAGAGGAC
AAAGAGGGGGAAGAAATTAGTTTTGCTTCCTTTGGAGGAGTCTCTGAGTCCTGCAGGGGAGGGCCTGGTT
CCAGGCTCTTGTGTTGTGGATTCTTTTCCAGAGGAAGTCTCTCCATTCCTTCAGCATGCCAGGAACTCTC
TGTTCCCATAG

Translation (586 aa):
MENHRKPSLLFHVPCLFVLTQLLSWVTTQEFRVFGPSDPIVAAPGGEAILPCSVFPAMNVENMEELRWFR
SRFSEAVLFYRDQEEQKEGQMPGYSQRTLLVKDQFHQGTAAVRILNVQASDSGIYICHFQQGVFYDEAIL
ELKVAAMGSVPEVHIKGPEDGGVCVVCMTSGWYPEPQVHWKDSRGENLTAFSSETHTKDAEGLFSTETLL
VVRDSSVRNVTCSIFNPILGQEKATAMFIPEPFFPQASPWKPAFLVTLTMMGLLVLGTSYLLRREHSARL
KVQQETVNFQREKDESLKTRDDALRTAGALMVERDRRKAAYRAAWKKAQLYADWRKEHFEAWTFTLDPAS
AHPILAISPDRLSVSRKDSTLCLDDLFCVLGIRGISSGRHYWEVKLRNGDSSKWTLGVCREGVDRKGCFS
ECPHKGFWTVGRSSSGYLAYIDTGTALLSLRQAPQSVGVFVDYTEGDISFYNMSDMSPMFSFHEASFSGT
LFPYFRLKSGNVSMIIQSMACASEGREGEDRRRGRKRSRKGRKGKRTKRGKKLVLLPLEESLSPAGEGLV
PGSCVVDSFPEEVSPFLQHARNSLFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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