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Report for CCDS50156.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50156.1 Public Mus musculus 17 Rfx2 23 108 98 CCDS HistoryNCBI Gene:19725Re-query CCDS DB by CCDS ID:50156.1Re-query CCDS DB by GeneID:19725See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50156.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002444.14 ENSMUSP00000002444.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002444.14Link to Ensembl Protein Viewer:ENSMUSP00000002444.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000002444Re-query CCDS DB by Protein ID:ENSMUSP00000002444
Original member NCBI NM_027787.1 NP_082063.1 Updated not alive Link to Nucleotide Sequence:NM_027787.1Link to Protein Sequence:NP_082063.1Re-query CCDS DB by Nucleotide ID:NM_027787Re-query CCDS DB by Protein ID:NP_082063
Current member NCBI NM_027787.2 NP_082063.1 Accepted alive Link to Nucleotide Sequence:NM_027787.2Link to Protein Sequence:NP_082063.1Re-query CCDS DB by Nucleotide ID:NM_027787Re-query CCDS DB by Protein ID:NP_082063Link to BLAST:NP_082063.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082063.1 717 P48379-1 717 100% 0 0

Chromosomal Locations for CCDS 50156.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 56776962 56777074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56777432 56777474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56777839 56777992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56779880 56780088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56780755 56780904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56782251 56782348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56783607 56783761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56784300 56784412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56784648 56784766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56785297 56785412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56786609 56786728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56787579 56787760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56799250 56799324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56803478 56803739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56804326 56804396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56805358 56805447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56808234 56808317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2154 nt):
ATGCAGAACTCCGAGGGAGGAGCAGATTCGCCAGCGTCAGTGGCTCTGCGTCCTGCAGCCCAGCCCATGC
CAGCCTCCCCACAGAGGGTGCTGGTCCAAGCTGCAGGCTCCACTCCCAAGGGTACCCCGATGCAGACACT
CACCCTCCCCAGAGTCCAGCCAGTGCCACCACAGGTGCAGCACGTGTACCCCGCGCAGGTGCAGTACGTG
GAGGGTGGGGACGCTGTCTACGCCAACGGAGCCATCCGAGCTGCCTACGCCTACAACCCAGACCCTCAGC
TTTACGCCCCCAGCAGCGCAGCATCTTACTTTGAGACTCCAGGTGGCACTCAGGTGACGGTGGCAGCCTC
ATCCCCACCTGCAGTCCCCTCCCACGGCATGGTGGGCATCACCATGGACGTCTCGGGGACCCCCATTGTG
TCTGGCGCAGGAGCCTACCTCATCCATGGGGGCATGGACGGCACAAGACACTCTCTGGCCCACACTGCAC
GATCCTCACCTGCCACGCTTGAAATGGCGATTGAGACTCTCCAAAAAAGCGAAGGCCTTGCCCCCCACAA
AGGCGGCCTGCTCAACAGCCATCTCCAGTGGCTTCTGGACAATTACGAGACAGCGGAGGGTGTGAGCCTG
CCCCGCAGCTCCCTGTACAACCACTACCTGCGCCACTGCCAGGAGCACAAGCTGGAGCCAGTCAATGCCG
CATCCTTTGGCAAACTCATCCGCTCTGTGTTCATGGGCCTGCGCACACGACGCCTGGGGACCAGGGGCAA
CTCAAAGTACCATTACTATGGGATCCGCCTGAAGCCAGACTCCCCACTGAACCGACTGCAGGAAGACACA
CAGTACATGGCCATGAGGCAGCAACCCACACACCAGAAGCCTAGGTATCGGCCAGCCCAGAAGTCAGACA
GCCTCGGGGATGGCAGCGCTCACAGCAACATGCACGGCATGCCCGATCAGGCCATGGCCACCCAGGGCCA
GCATCACCAGCAGTACATAGATGTGTCCCACGTCTTCCCAGAGTTCCCGGCACCTGACCTAGGCAGCACG
CTACTGCAGGAGAGCGTCACCCTTCATGATGTGAAGGCCCTGCAGCTGGTGTATCGCAGGCACTGTGAGG
CTACCTTAGATGTCGTCATGAACCTCCAGTTTCAGTACATTGAGAAGCTCTGGTTGTCCTTCTGGAACTG
CAAGGCCACCTCCAGCGATAGCTGTGCCTCGCTGCCTGCCAGCGATGAGGACCCAGAAGTCACCCTCCTC
CCTAAGGAGAAGCTCATCTCTCTGTGTAAATGTGAGCCGATCCTACAGTGGATGCGAAGCTGCGATCACA
TCCTGTACCAGACGCTGGTGGAGACCCTTATCCCAGATGTGCTGCGGCCTGTCCCCAGTTCCCTCACCCA
GGCCATCAGGAACTTCGCCAAGAGCCTAGAGGGCTGGCTCATCAATGCCATGAGTGGCTTCCCTCAGCAG
GTCATCCAGACCAAGGTGGGTGTTGTAAGTGCCTTCGCACAGACACTGCGGCGCTACACGTCCCTCAACC
ACCTGGCGCAGGCGGCACGTGCTGTGTTGCAGAACACGTCACAGATTAACCAGATGCTGAGTGACCTCAA
CCGCGTGGACTTTGCCAATGTGCAGGAGCAGGCCTCGTGGGTGTGCCAGTGTGAGGAGAGCCTGGTGCAG
CGTTTGGAGCATGACTTCAAGGTCACCCTGCAGCAGCAGAGCTCGCTGGACCAGTGGGCCAGCTGGCTAG
ACAACGTGGTCACCCAGGTCCTGAAGCAGCACTCAGGCAGCCCCAGCTTCCCCAAGGCTGCGCGCCAGTT
CCTGCTCAAGTGGTCCTTCTACAGCTCCATGGTGATCCGTGACCTGACCCTGCGCAGTGCTGCCAGCTTC
GGTTCCTTCCACCTCATCCGGCTGCTCTATGACGAGTACATGTTCTACCTGGTGGAGCACCGTGTGGCCC
AGGCCACCGGGGAGACGCCCATTGCCGTCATGGGCGAGTTCAACGATCTGGCCTCCCTGTCACTGACCCT
GCTGGACAAAGAGGACATTGGGGATGGACACAGCAGTGAGGCAGATGTGGATGGCCGCAGCCTGGGTGAG
CCCCTCGTGAAACGGGAACGGAGTGACCCCAGCCACCCACTGCAGGGCATCTAG

Translation (717 aa):
MQNSEGGADSPASVALRPAAQPMPASPQRVLVQAAGSTPKGTPMQTLTLPRVQPVPPQVQHVYPAQVQYV
EGGDAVYANGAIRAAYAYNPDPQLYAPSSAASYFETPGGTQVTVAASSPPAVPSHGMVGITMDVSGTPIV
SGAGAYLIHGGMDGTRHSLAHTARSSPATLEMAIETLQKSEGLAPHKGGLLNSHLQWLLDNYETAEGVSL
PRSSLYNHYLRHCQEHKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGIRLKPDSPLNRLQEDT
QYMAMRQQPTHQKPRYRPAQKSDSLGDGSAHSNMHGMPDQAMATQGQHHQQYIDVSHVFPEFPAPDLGST
LLQESVTLHDVKALQLVYRRHCEATLDVVMNLQFQYIEKLWLSFWNCKATSSDSCASLPASDEDPEVTLL
PKEKLISLCKCEPILQWMRSCDHILYQTLVETLIPDVLRPVPSSLTQAIRNFAKSLEGWLINAMSGFPQQ
VIQTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQCEESLVQ
RLEHDFKVTLQQQSSLDQWASWLDNVVTQVLKQHSGSPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASF
GSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMGEFNDLASLSLTLLDKEDIGDGHSSEADVDGRSLGE
PLVKRERSDPSHPLQGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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