NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50376.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50376.1 Public Mus musculus 19 Macrod1 23 108 98 CCDS HistoryNCBI Gene:107227Re-query CCDS DB by CCDS ID:50376.1Re-query CCDS DB by GeneID:107227See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50376.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040261.6 ENSMUSP00000039507.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040261.6Link to Ensembl Protein Viewer:ENSMUSP00000039507.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000040261Re-query CCDS DB by Protein ID:ENSMUSP00000039507
Original member NCBI NM_134147.4 NP_598908.2 Updated not alive Link to Nucleotide Sequence:NM_134147.4Link to Protein Sequence:NP_598908.2Re-query CCDS DB by Nucleotide ID:NM_134147Re-query CCDS DB by Protein ID:NP_598908
Current member NCBI NM_134147.5 NP_598908.2 Accepted alive Link to Nucleotide Sequence:NM_134147.5Link to Protein Sequence:NP_598908.2Re-query CCDS DB by Nucleotide ID:NM_134147Re-query CCDS DB by Protein ID:NP_598908Link to BLAST:NP_598908.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598908.2 323 Q922B1 323 100% 0 0

Chromosomal Locations for CCDS 50376.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7056891 7057182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7065465 7065566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7066087 7066203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7185576 7185605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7196414 7196530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7196789 7196910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7197005 7197035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7197151 7197224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7197532 7197613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7197702 7197706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGTCGCTGCAGAGCCAAGTGTCCGGCCGCCTGGCACAGCTGCGCGCGGCGGGGCAGCTGCTGGTCTCCC
TGCGCCCCTGGCCCGGCCGCTCGGCGGGTGGCCCGCGGCCCCGTGGCAGTGCGTGCGGTCCCCTGGTGGC
ACTGGGCGAGCACGGCTACTGCGCGTGGCTCTCGGCGGGAGTTGGGGCGTGGGGGGCGGCGGGGCGTGGA
GCCTGGGTGCGCACCTGGGCCCCCCTGGCCATGGCCGCGAAGGTGGACCTGAGCACCTCCACCGACTGGA
AGGAGGCCAAATCCTTTCTGAAGGGCCTGAGTGACAAGCAGAGAGAGGAACATTACTTCTGCAAGGATTT
CATTAAGCTGAAGAAGATCCCCACGTGGAAGGAGACAGCAAAAGGGCTGGCTGTGAAGGTGGAGGACCCC
AAGTATAAGAAGGACAAGCAACTGAATGAGAAAATCTCCCTGTACCGTGGGGACATCACCAAGCTGGAGG
TGGATGCCATTGTCAACGCTGCCAACAGCTCCCTGCTTGGAGGCGGAGGGGTGGACGGCTGCATTCATCG
GGCCGCGGGATCCCTGCTCACGGACGAATGCCGCACCCTACAGAACTGCGAGACCGGCAAAGCCAAGATC
ACTTGCGGCTATCGGCTGCCAGCCAAGTATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCA
CTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCT
GCGCTCAGTGGCTTTCCCGTGCATCTCCACAGGCGTGTTTGGCTACCCCAATGAGGAGGCTGCAGAAGTA
GTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGGTGGATCGGCTCATCATCTGTGTGT
TCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCCTGA

Translation (323 aa):
MSLQSQVSGRLAQLRAAGQLLVSLRPWPGRSAGGPRPRGSACGPLVALGEHGYCAWLSAGVGAWGAAGRG
AWVRTWAPLAMAAKVDLSTSTDWKEAKSFLKGLSDKQREEHYFCKDFIKLKKIPTWKETAKGLAVKVEDP
KYKKDKQLNEKISLYRGDITKLEVDAIVNAANSSLLGGGGVDGCIHRAAGSLLTDECRTLQNCETGKAKI
TCGYRLPAKYVIHTVGPIAVGQPTASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGYPNEEAAEV
VLASLREWLEQHKDKVDRLIICVFLEKDEGIYRERLPHYFPVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH