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Report for CCDS50436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50436.1 Public Mus musculus 19 Exosc1 23 108 98 CCDS HistoryNCBI Gene:66583Re-query CCDS DB by CCDS ID:50436.1Re-query CCDS DB by GeneID:66583See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 50436.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112123.3 ENSMUSP00000107751.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112123.3Link to Ensembl Protein Viewer:ENSMUSP00000107751.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112123Re-query CCDS DB by Protein ID:ENSMUSP00000107751
Original member Current member NCBI NM_001164561.1 NP_001158033.1 Accepted alive Link to Nucleotide Sequence:NM_001164561.1Link to Protein Sequence:NP_001158033.1Re-query CCDS DB by Nucleotide ID:NM_001164561Re-query CCDS DB by Protein ID:NP_001158033Link to BLAST:NP_001158033.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158033.1 154 Q9DAA6-2 154 100% 0 0

Chromosomal Locations for CCDS 50436.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 41923982 41924088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41924711 41924795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41925189 41925239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41931356 41931430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41933049 41933164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41933252 41933282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (465 nt):
ATGGCACCACCGGTGAGGTACTGCATCCCCGGCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCA
GCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAA
TGGCGCGGTTCCCGTGGTGTCAGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAGCTGTC
GTCACCTGTAAGGTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTTATCTCCC
TAGGCGATGCACAGTCCAATTACCTGCTGACTACTGCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAG
TGAGTCAGGTGTTCAGATGGTTCCCATCAGCTGGTGTGAGATGCAGTGCCCCAAGACCCACACTAAAGAA
TTCCGAAAAGTGGCCCGAGTACAGCCCGAGTTCCTACAGACCTAA

Translation (154 aa):
MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLMKTSENGAVPVVSVMRETESQLLPDVGAV
VTCKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTKE
FRKVARVQPEFLQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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